Skip to content

Instantly share code, notes, and snippets.

@lwaldron
Created September 1, 2020 19:41
Show Gist options
  • Save lwaldron/985ec24b2030b5643b0a5be7ed0b4cee to your computer and use it in GitHub Desktop.
Save lwaldron/985ec24b2030b5643b0a5be7ed0b4cee to your computer and use it in GitHub Desktop.
Quick test for download/construction time of acc_tcga IMPACT341 panel
# docker run -it bioconductor/bioconductor_docker:latest R
BiocManager::install("cBioPortalData")
library(cBioPortalData)
cBio <- cBioPortal()
system.time(acc <- cBioPortalData(cBio, studyId = "acc_tcga", genePanelId = "IMPACT341"))
acc
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment