m-albert’s gists

m-albert / stitching_simple.ipynb

Last active September 4, 2024 19:16

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m-albert / bioimageio-colab-correction.imjoy.html

Last active August 2, 2024 11:39

	<docs lang="markdown">
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "Untitled Plugin",
	"type": "window",
	"tags": [],
	"ui": "",

m-albert / bioimageio-colab-annotator.imjoy.html

Last active June 30, 2024 16:19

	<config lang="json">
	{
	"name": "BioImage.IO Colab Annotator",
	"type": "web-python",
	"tags": [],
	"ui": "",
	"version": "0.1.0",
	"cover": "",
	"description": "Collaborative Annotator for BioImage.IO with Automated Segmentation",
	"icon": "extension",

m-albert / LMM.mrc.mdoc

Created April 6, 2023 10:28

Example SerialEM .mdoc (Titan Krios D3692 at Institut Pasteur)

	PixelSpacing = 656.139
	Voltage = 300
	ImageFile = LMM.mrc
	ImageSize = 5064 3976
	Montage = 1
	DataMode = 1

	[T = SerialEM: Titan Krios D3692 at Institut Pasteur 25-Mar-21 16:59:53]

	[T = Tilt axis angle = -86.7, binning = 1 spot = 7 camera = 1]

m-albert / profile.html

Created January 23, 2023 14:22

	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="utf-8">
	<title>Bokeh Plot</title>
	<script type="text/javascript" src="https://cdn.bokeh.org/bokeh/release/bokeh-2.4.3.min.js"></script>
	<script type="text/javascript">
	Bokeh.set_log_level("info");
	</script>
	</head>

m-albert / profile.html

Created January 23, 2023 13:41

	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="utf-8">
	<title>Bokeh Plot</title>
	<script type="text/javascript" src="https://cdn.bokeh.org/bokeh/release/bokeh-2.4.3.min.js"></script>
	<script type="text/javascript">
	Bokeh.set_log_level("info");
	</script>
	</head>

m-albert / profile.html

Created January 23, 2023 13:36

	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="utf-8">
	<title>Bokeh Plot</title>
	<script type="text/javascript" src="https://cdn.bokeh.org/bokeh/release/bokeh-2.4.3.min.js"></script>
	<script type="text/javascript">
	Bokeh.set_log_level("info");
	</script>
	</head>

m-albert / Bokeh Plot.html

Created January 23, 2023 13:34

	<!DOCTYPE html>
	<!-- saved from url=(0080)file:///private/var/folders/fb/ccf_crrx195fclngv32r4xcc0000gq/T/tmp6csdtrjn.html -->
	<html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><style class="bk" type="text/css">.bk-root{position:relative;width:auto;height:auto;box-sizing:border-box;font-family:Helvetica, Arial, sans-serif;font-size:13px;}.bk-root .bk,.bk-root .bk:before,.bk-root .bk:after{box-sizing:inherit;margin:0;border:0;padding:0;background-image:none;font-family:inherit;font-size:100%;line-height:1.42857143;}.bk-root pre.bk{font-family:Courier, monospace;}.bk-root .bk-logo{margin:5px;position:relative;display:block;background-repeat:no-repeat;}.bk-root .bk-logo.bk-grey{filter:url("data:image/svg+xml;utf8,<svg xmlns='http://www.w3.org/2000/svg'><filter id='grayscale'><feColorMatrix type='matrix' values='0.3333 0.3333 0.3333 0 0 0.3333 0.3333 0.3333 0 0 0.3333 0.3333 0.3333 0 0 0 0 0 1 0'/></filter></svg>#grayscale");filter:gray;-webkit-filter:grayscale(100%);}.bk-ro

m-albert / blending_fusion.ipynb

Created November 29, 2022 18:10

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m-albert / affine_transform_dask.py

Created October 9, 2020 10:59

Affine transformation for dask arrays: Wrapper around `ndimage.affine_transform`

	#!/usr/bin/env python

	"""
	Affine transformation for dask arrays: Wrapper around `ndimage.affine_transform`
	"""

	__author__ = "Marvin Albert"
	__email__ = "[email protected]"

Marvin Albert m-albert