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macmanes/streaming.sh

Created August 17, 2015 17:33
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Streaming 2 pass Diginorm FTW!
Raw
streaming.sh
interleave-reads.py file.1.fq.gz file.2.fq.gz \
| normalize-by-median.py --max-memory-usage 8e10 -C 30 -o - - \
| trim-low-abund.py -M 8e10 -o 2pass.fq --cutoff 2 --gzip -
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