setup-science-env.sh

#!/bin/bash
echo "Install netcdf"
brew reinstall netcdf

echo "Stop postgres if installed"
pg_ctl -D /usr/local/var/postgres stop -s -m fast

echo "Remove previous verion of postgis"
brew uninstall --force postgis

echo "Remove previous version of postgres"
brew uninstall --force postgresql

echo "Delete all files associated with postgres"
rm -rf /usr/local/var/postgres || true

echo "Reinstall new version of postgres"
brew install postgis

echo "Install postgis"
brew install postgis

echo "start the postgres server"
pg_ctl -D /usr/local/var/postgres -l logfile start

echo "sleep 5 seconds for the service to start"
sleep 5

#echo "create database file"
#initdb /usr/local/var/postgres

echo "restart postgres"
pg_ctl -D /usr/local/var/postgres stop -s -m fast
pg_ctl -D /usr/local/var/postgres -l logfile start

echo "Sleeping for 5 to allow the database to start up"
sleep 5

echo "create new database for logged in user"
createdb

echo "create default postgres user"
psql -c "CREATE USER postgres"

psql -c "CREATE DATABASE postgres"

psql -c "ALTER USER postgres WITH SUPERUSER"

echo "enable postgis on default database"
psql -c "CREATE EXTENSION postgis" -U postgres

echo "install java jdk for nco"
brew cask install adoptopenjdk

echo "install previous versions of nco"
brew reinstall nco

echo "remove old netcdf"
pip3 uninstall -y netcdf4

echo "install python-netcdf"
pip3 install netcdf4