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maneeshi/gist:412ef98ab0fba2ac4d0c

Created August 13, 2014 22:12
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Fasta to chrom.sizes
Raw
gistfile1.txt
awk '$0 ~ ">" {print c; c=0;printf substr($0,2,100) "\t"; } $0 !~ ">" {c+=length($0);} ' /Users/Maneeshi/XlaevisBlastDB/Xlaevis6.1.fa > chrom.sizes
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