Simon Li manics

mybinder/repo2docker PostgreSQL server

Example mybinder repo with a built-in PostgreSQL server.

JupyterHub LDAP user id example

This example has moved to https://github.com/manics/zero-to-jupyterhub-k8s-examples/tree/main/ldap-singleuser

IDR Tara Oceans Geospatial data

This notebook shows how to plot geospatial metadata attached to the samples gathered by the Tara Oceans project.

Moved to https://github.com/microscopepony/idr0015-tara-oceans-geospatial.

IDR Montage

Create a montage of IDR thumbnails.

Moved to https://github.com/microscopepony/idr-montage.

Connect to OMERO, passing parameters as URL query parameters

This notebook requires the parameters host, username, passwd

If you already have a notebook opened you can pass the parameters by adding this query string to the URL in your browser:

?host='HOST'&username='USERNAME'&passwd='PASSWD'

or

Run a Jupyter Notebook on BinderHub non-interactively from the command line

The notebook should contain a cell starting with # Parameters:

Example:

./binderhub-exec.py \
    gist/manics/421f2927bb1dbdbc00754a7669eb3f69/master \
    idr-image.ipynb \

IMAGE_ID=4495402

IDR Release Stats

Moved to https://github.com/microscopepony/idr-release-stats

SSH agent forwarding and screen

When connecting to a remote server via SSH it is often convenient to use SSH agent forwarding so that you don't need a separate keypair on that server for connecting to further servers.

This is enabled by adding the

ForwardAgent yes

option to any of your Host entries in ~/.ssh/config (or alternatively with the -A option). Don't set this option in a wildcard Host * section since any user on the remote server that can bypass file permissions can now als use keys loaded in your SSH agent. So only use this with hosts you trust.


	# (C) 2012, Michael DeHaan, <[email protected]>

	# This file is part of Ansible
	#
	# Ansible is free software: you can redistribute it and/or modify
	# it under the terms of the GNU General Public License as published by
	# the Free Software Foundation, either version 3 of the License, or
	# (at your option) any later version.
	#