This example embeds an authenticated request to a service into the template for /hub/home.
The user may not be logged in to the service when the page is requested,
so we must process the oauth login to the service in that event.
To avoid the user having to experience any of the login process, this requires:
| #!/usr/bin/bash -xe | |
| cat <<EOF > "${HOME}/.config/systemd/user/zoom.slice" | |
| [Slice] | |
| AllowedCPUs=0-4 | |
| MemoryHigh=6G | |
| EOF | |
| cat /usr/share/applications/Zoom.desktop | sed -E 's#^(Exec=).*$#Exec=/usr/bin/systemd-run --user --slice=zoom.slice /opt/zoom/ZoomLauncher#' > "${HOME}/.local/share/applications/Zoom.desktop" |
| import matplotlib.pyplot as plt | |
| import numpy as np | |
| import omero | |
| from omero.gateway import BlitzGateway, ColorHolder | |
| from omero.model import MaskI, RoiI | |
| from omero.rtypes import rdouble, rint, rstring | |
| from skimage.filters import threshold_otsu | |
| from skimage.measure import label, regionprops | |
| OME_HOST = "merge-ci" |
Try it on Binder!
This conda environment demonstrates how to install JupyterLab extensions with conda or mamba, without any end user build or requiring Node.js.
It also installs the xeus-python kernel to enable the visual debugger sidebar by default.
| Copyright 2020 Brian Wojtczak | |
| Permission is hereby granted, free of charge, to any person obtaining a | |
| copy of this software and associated documentation files (the "Software"), | |
| to deal in the Software without restriction, including without limitation | |
| the rights to use, copy, modify, merge, publish, distribute, sublicense, | |
| and/or sell copies of the Software, and to permit persons to whom the | |
| Software is furnished to do so, subject to the following conditions: | |
| The above copyright notice and this permission notice shall be included |
| from urllib.parse import urlsplit | |
| from tornado import gen | |
| from tornado.escape import url_escape | |
| from tornado.httputil import url_concat | |
| from traitlets import ( | |
| Unicode, Integer, Dict, TraitError, List, Bool, Any, | |
| Type, Set, Instance, Bytes, Float, | |
| observe, default, |
| # Copy the config locally so we don't lose it | |
| cp dist/etc/grid/config.xml config.xml | |
| # Delete all previous symlinks, so that 'clean' doesn't delete src code | |
| rm dist/lib/python/omeroweb | |
| rm dist/lib/python/omero/gateway | |
| rm components/tools/target/lib/python/omeroweb | |
| rm components/tools/target/lib/python/omero/gateway | |
| rm components/tools/OmeroPy/target/omero/testlib/ | |
| rm components/tools/OmeroPy/target/omero/gateway |
| # make sure crypt module in use | |
| sudo modprobe dm-crypt | |
| # Find out which drive it was with the following command: | |
| sudo fdisk -l | |
| # You must mount /dev/sda3 myvolume | |
| # use cryptsetup, device is accessible under /dev/mapper/myvolume | |
| sudo cryptsetup luksOpen /dev/sde3 myvolume |
...an open source project to pack, ship and run any application as a lightweight container.
