Will Moore will-moore
will-moore
/ idr0079_public.json
Created
September 30, 2026 15:56
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 9, | |
| "figure_version": "0.1.0.dev0", | |
| "panels": [ | |
| { | |
| "x": 24.182248725928552, | |
| "y": 101.17813363824555, | |
| "width": 145.0812279974126, | |
| "height": 110.50398803175536, | |
| "zoom": 100, |
will-moore
/ idr0079_demo.json
Created
September 30, 2026 06:16
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 9, | |
| "figure_version": "0.1.0.dev0", | |
| "panels": [ | |
| { | |
| "x": 39.01518275289776, | |
| "y": 90.76765460458486, | |
| "width": 136.22895622895618, | |
| "height": 100.62731822509528, | |
| "zoom": 100, |
will-moore
/ OBPM_demo_figure.json
Created
September 29, 2026 09:01
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 9, | |
| "figure_version": "0.1.0.dev0", | |
| "panels": [ | |
| { | |
| "x": 19.02198589870549, | |
| "y": 87.30718101575125, | |
| "width": 139.15815109018988, | |
| "height": 99.06054477861764, | |
| "zoom": 100, |
will-moore
/ IDR_ome.zarr_v0.5_images.json
Created
September 17, 2026 15:26
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 9, | |
| "panels": [ | |
| { | |
| "x": 33.99026709884924, | |
| "y": 348.31190919372835, | |
| "width": 239.40235690235693, | |
| "height": 178.26563015148622, | |
| "zoom": 197, | |
| "dx": 0, |
will-moore
/ NGFF_samples_BIA_BFF.json
Created
April 24, 2026 14:02
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 9, | |
| "panels": [ | |
| { | |
| "x": 25.791648388324507, | |
| "y": 127.03721218834659, | |
| "width": 398.43134330405206, | |
| "height": 198.33333333333331, | |
| "zoom": 100, | |
| "dx": 0, |
will-moore
/ ngff_images_figure.json
Last active
April 13, 2026 11:15
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 9, | |
| "panels": [ | |
| { | |
| "x": 32.776939633609516, | |
| "y": 299.60384546911166, | |
| "width": 157, | |
| "height": 160.5839416058394, | |
| "zoom": 100, | |
| "dx": 0, |
will-moore
/ ome_zarr_converter.py
Last active
November 7, 2025 11:27
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # conda activate kong_idr | |
| # pip install alpineer | |
| # Successfully installed alpineer-0.1.13 charset-normalizer-2.1.1 contourpy-1.3.3 cycler-0.12.1 fonttools-4.60.1 imageio-2.37.0 | |
| # kiwisolver-1.4.9lazy-loader-0.4 matplotlib-3.10.7 natsort-8.4.0 networkx-3.5 numpy-1.26.4 packaging-25.0 pandas-2.3.3 pillow-12.0.0 | |
| # pyparsing-3.2.5 python-dateutil-2.9.0.post0 pytz-2025.2 scikit-image-0.25.2 scipy-1.16.2 six-1.17.0 tifffile-2025.10.16 tzdata-2025.2 | |
| # xarray-2025.10.1 xmltodict-0.13.0 | |
| # pip install zarr |
will-moore
/ OMERO.figure_NGFF_demo.json
Last active
April 7, 2026 13:19
Test figure.json for https://github.com/ome/omero-figure/pull/619
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "version": 8, | |
| "panels": [ | |
| { | |
| "x": 32.776939633609516, | |
| "y": 299.60384546911166, | |
| "width": 157, | |
| "height": 160.5839416058394, | |
| "zoom": 100, | |
| "dx": 0, |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| SSBD Project | ID SSBD Dataset ID | license | URL | Date added | |
|---|---|---|---|---|---|
| 2-Kyoda-WormEmbryoRNAi | wt_N2_030303_01 | CC BY-SA | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/wt-N2-030303-01.zarr | 2023-03-22 | |
| 98-Morita-ToothEpiCellDev | fig2ab_trajectory_epithelialcell | CC BY | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/fig2ab_trajectory_epithelialcell.zarr | 2023-03-22 | |
| 48-Susaki-MouseBrainCUBIC | Fig3A_R26-pCAG-nuc-3xmKate2 | CC BY | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/Fig3A_R26-pCAG-nuc-3xmKate2.zarr | 2023-03-22 | |
| 48-Susaki-MouseBrainCUBIC | Fig3C_H2B-mCherry | CC BY | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/Fig3C_H2B-mCherry.zarr | 2023-03-22 | |
| 48-Susaki-MouseBrainCUBIC | Fig3D_H2B-EGFP | CC BY | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/Fig3D_H2B-EGFP.zarr | 2023-03-22 | |
| 48-Susaki-MouseBrainCUBIC | Fig3E_Thy1-YFP-H | CC BY | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/Fig3E_Thy1-YFP-H.zarr | 2023-03-22 | |
| 199-Ichimura-MulticellularDyn | Fig2_BrainSliceRGB | CC BY-NC | https://ssbd.riken.jp/100118-dcacbb41/zarr/v0.4/Fig2_BrainSliceRGB.zarr | 2023-03-2 |
will-moore
/ inplace_fileset4.py
Created
April 4, 2023 10:16
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import argparse | |
| import os | |
| import sys | |
| import omero.clients | |
| from omero.cli import cli_login | |
| from omero.rtypes import rstring, rlong | |
| from omero.gateway import BlitzGateway |
NewerOlder