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gnu.trove.TObjectHash
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| Caused by: java.io.InvalidClassException: gnu.trove.TObjectHash; local class incompatible: stream classdesc serialVersionUID = -3461112548087185871, local class serialVersionUID = 876253628862239263 | |
| at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:617) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1622) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1517) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1622) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1517) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1771) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at cc.mallet.pipe.tsf.LexiconMembership.readObject(LexiconMembership.java:107) ~[mallet-2.0.7.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at java.util.ArrayList.readObject(ArrayList.java:771) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at cc.mallet.pipe.SerialPipes.readObject(SerialPipes.java:142) ~[mallet-2.0.7.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at cc.mallet.fst.Transducer.readObject(Transducer.java:219) ~[mallet-2.0.7.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at ch.epfl.bbp.uima.ae.BrainRegionAnnotator.initialize(BrainRegionAnnotator.java:134) ~[bluima_regions-0.1.jar:na] |
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| org.sherlok.utils.ValidationException: could not initialize UIMA pipeline: Initialization of annotator class "org.apache.uima.ruta.engine.RutaEngine" failed. (Descriptor: <unknown>) | |
| at org.sherlok.PipelineLoader.load(PipelineLoader.java:185) ~[sherlok_core-0.1-SNAPSHOT.jar:na] | |
| at org.sherlok.SherlokServer$3.handle(SherlokServer.java:162) ~[sherlok_core-0.1-SNAPSHOT.jar:na] | |
| at spark.webserver.MatcherFilter.doFilter(MatcherFilter.java:139) [spark-core-1.1.1.jar:na] | |
| at spark.webserver.JettyHandler.doHandle(JettyHandler.java:54) [spark-core-1.1.1.jar:na] | |
| at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:179) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:136) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.server.handler.HandlerList.handle(HandlerList.java:52) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.server.Server.handle(Server.java:451) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.server.HttpChannel.run(HttpChannel.java:252) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:266) [jetty-server-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.io.AbstractConnection$ReadCallback.run(AbstractConnection.java:240) [jetty-io-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:596) [jetty-util-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:527) [jetty-util-9.0.2.v20130417.jar:9.0.2.v20130417] | |
| at java.lang.Thread.run(Thread.java:745) [na:1.7.0_75] | |
| Caused by: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.uima.ruta.engine.RutaEngine" failed. (Descriptor: <unknown>) | |
| at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:264) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:169) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:331) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:448) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:205) ~[uimafit-core-2.1.0.jar:2.1.0] | |
| at org.sherlok.UimaPipeline.createEngines(UimaPipeline.java:270) ~[sherlok_core-0.1-SNAPSHOT.jar:na] | |
| at org.sherlok.UimaPipeline.initEngines(UimaPipeline.java:228) ~[sherlok_core-0.1-SNAPSHOT.jar:na] | |
| at org.sherlok.UimaPipeline.<init>(UimaPipeline.java:122) ~[sherlok_core-0.1-SNAPSHOT.jar:na] | |
| at org.sherlok.PipelineLoader.load(PipelineLoader.java:183) ~[sherlok_core-0.1-SNAPSHOT.jar:na] | |
| ... 14 common frames omitted | |
| Caused by: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "ch.epfl.bbp.uima.ae.BrainRegionAnnotator" failed. (Descriptor: file:/Users/m/Prog/Projects/MasterProject/sherlok/config/resources/.engines/BrainRegionAnnotator___1_0_1.xml) | |
| at org.apache.uima.ruta.engine.RutaEngine.initialize(RutaEngine.java:468) ~[ruta-core-2.2.1.jar:2.2.1] | |
| at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:262) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| ... 25 common frames omitted | |
| Caused by: org.apache.uima.analysis_engine.AnalysisEngineProcessException: Initialization of annotator class "ch.epfl.bbp.uima.ae.BrainRegionAnnotator" failed. (Descriptor: file:/Users/m/Prog/Projects/MasterProject/sherlok/config/resources/.engines/BrainRegionAnnotator___1_0_1.xml) | |
| at org.apache.uima.ruta.engine.RutaEngine.initializeScript(RutaEngine.java:755) ~[ruta-core-2.2.1.jar:2.2.1] | |
| at org.apache.uima.ruta.engine.RutaEngine.initialize(RutaEngine.java:466) ~[ruta-core-2.2.1.jar:2.2.1] | |
| ... 26 common frames omitted | |
| Caused by: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "ch.epfl.bbp.uima.ae.BrainRegionAnnotator" failed. (Descriptor: file:/Users/m/Prog/Projects/MasterProject/sherlok/config/resources/.engines/BrainRegionAnnotator___1_0_1.xml) | |
| at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:264) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:169) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:371) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| at org.apache.uima.ruta.engine.Ruta.wrapAnalysisEngine(Ruta.java:98) ~[ruta-core-2.2.1.jar:2.2.1] | |
| at org.apache.uima.ruta.engine.Ruta.wrapAnalysisEngine(Ruta.java:89) ~[ruta-core-2.2.1.jar:2.2.1] | |
| at org.apache.uima.ruta.extensions.DefaultEngineLoader.loadEngineMyself(DefaultEngineLoader.java:49) ~[ruta-core-2.2.1.jar:2.2.1] | |
| at org.apache.uima.ruta.extensions.RutaEngineLoader.loadEngine(RutaEngineLoader.java:52) ~[ruta-core-2.2.1.jar:2.2.1] | |
| at org.apache.uima.ruta.engine.RutaEngine.initializeScript(RutaEngine.java:753) ~[ruta-core-2.2.1.jar:2.2.1] | |
| ... 27 common frames omitted | |
| Caused by: org.apache.uima.resource.ResourceInitializationException: null | |
| at ch.epfl.bbp.uima.ae.BrainRegionAnnotator.initialize(BrainRegionAnnotator.java:146) ~[bluima_regions-1.0.1.jar:na] | |
| at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:262) ~[uimaj-core-2.7.0.jar:2.7.0] | |
| ... 37 common frames omitted | |
| Caused by: java.io.InvalidClassException: gnu.trove.TObjectHash; local class incompatible: stream classdesc serialVersionUID = -3461112548087185871, local class serialVersionUID = 876253628862239263 | |
| at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:617) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1622) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1517) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1622) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1517) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1771) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at cc.mallet.pipe.tsf.LexiconMembership.readObject(LexiconMembership.java:107) ~[mallet-2.0.7.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at java.util.ArrayList.readObject(ArrayList.java:771) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at cc.mallet.pipe.SerialPipes.readObject(SerialPipes.java:142) ~[mallet-2.0.7.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at cc.mallet.fst.Transducer.readObject(Transducer.java:219) ~[mallet-2.0.7.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_75] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_75] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_75] | |
| at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_75] | |
| at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350) ~[na:1.7.0_75] | |
| at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370) ~[na:1.7.0_75] | |
| at ch.epfl.bbp.uima.ae.BrainRegionAnnotator.initialize(BrainRegionAnnotator.java:134) ~[bluima_regions-1.0.1.jar:na] | |
| ... 38 common frames omitted |
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