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Last active December 24, 2015 03:09
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Raw
code.R
# read data and replace dots in names with underscores
obesity = read.csv(
'http://www.stat.berkeley.edu/classes/s133/data/obesity.csv',
stringsAsFactors = F
)
names(obesity) = gsub("\\.", "_", names(obesity))
# add column with two letter state names and
obesity = plyr::mutate(obesity,
State = str_trim(State),
state = state.abb[match(State, state.name)],
)
rCharts::choropleth(
cut(Adult_Obesity_Rate, 5, labels = F) ~ state,
data = obesity,
pal = 'PuRd'
)
Raw
index.html
<!doctype HTML>
<meta charset = 'utf-8'>
<html>
<head>
<link rel='stylesheet' href="http://netdna.bootstrapcdn.com/bootswatch/2.3.1/cosmo/bootstrap.min.css">
<link rel="stylesheet" href="http://netdna.bootstrapcdn.com/twitter-bootstrap/2.3.1/css/bootstrap-responsive.min.css" >
<link rel='stylesheet' href="http://getbootstrap.com/2.3.2/assets/js/google-code-prettify/prettify.css">
<link rel='stylesheet' href="http://aozora.github.io/bootplus/assets/css/docs.css">
<script src='http://d3js.org/d3.v3.min.js' type='text/javascript'></script>
<script src='http://d3js.org/topojson.v1.min.js' type='text/javascript'></script>
<script src='http://datamaps.github.io/scripts/datamaps.all.min.js' type='text/javascript'></script>
<style>
.rChart {
display: block
margin: auto auto;
width: 100%;
height: 400px;
}
/*
body {
margin-top: 60px;
}
*/
</style>
</head>
<body>
<div class='container'>
<div class='row'>
<div class='span8'>
<div class="bs-docs-example">
<div id='chart9b32255b1eac' class='rChart datamaps'>
</div>
<br/>
<pre><code class='r'># read data and replace dots in names with underscores
obesity = read.csv(
'http://www.stat.berkeley.edu/classes/s133/data/obesity.csv',
stringsAsFactors = F
)
names(obesity) = gsub(&quot;\\.&quot;, &quot;_&quot;, names(obesity))
# add column with two letter state names and
obesity = plyr::mutate(obesity,
State = str_trim(State),
state = state.abb[match(State, state.name)],
)
rCharts::choropleth(
cut(Adult_Obesity_Rate, 5, labels = F) ~ state,
data = obesity,
pal = 'PuRd'
)
</code></pre>
</div>
</div>
</div>
</div>
<script>
var chartParams = {
"dom": "chart9b32255b1eac",
"width": 700,
"height": 400,
"scope": "usa",
"geographyConfig": {
"popupTemplate": function(geography, data) {
var html = '<div class="hoverinfo"><h4>' + geography.properties.name + '</h4><strong>Adult Obesity Rate:</strong> ' + data.Adult_Obesity_Rate;
html += '<br/><strong>Mandates Obesity Treatment Coverage:</strong> ' + data.Mandates_Obesity_Treatment_Coverage;
return html + '</div>';
}
},
"fills": {
"5": "#F1EEF6",
"1": "#D7B5D8",
"4": "#DF65B0",
"3": "#DD1C77",
"2": "#980043"
},
"data": {
"AK": {
"State": "Alaska",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.11,
"Adult_Obesity_Rate": 0.624,
"state": "AK",
"fillKey": 5
},
"AL": {
"State": "Alabama",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.17,
"Adult_Obesity_Rate": 0.623,
"state": "AL",
"fillKey": 5
},
"AR": {
"State": "Arkansas",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.16,
"Adult_Obesity_Rate": 0.619,
"state": "AR",
"fillKey": 4
},
"AZ": {
"State": "Arizona",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.535,
"state": "AZ",
"fillKey": 1
},
"CA": {
"State": "California",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.579,
"state": "CA",
"fillKey": 3
},
"CO": {
"State": "Colorado",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.1,
"Adult_Obesity_Rate": 0.523,
"state": "CO",
"fillKey": 1
},
"CT": {
"State": "Connecticut",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.552,
"state": "CT",
"fillKey": 2
},
"DE": {
"State": "Delaware",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.15,
"Adult_Obesity_Rate": 0.605,
"state": "DE",
"fillKey": 4
},
"FL": {
"State": "Florida",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.582,
"state": "FL",
"fillKey": 3
},
"GA": {
"State": "Georgia",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " Yes ",
"Childhood_Obesity_Rate": 0.16,
"Adult_Obesity_Rate": 0.605,
"state": "GA",
"fillKey": 4
},
"HI": {
"State": "Hawaii",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.514,
"state": "HI",
"fillKey": 1
},
"IA": {
"State": "Iowa",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.602,
"state": "IA",
"fillKey": 4
},
"ID": {
"State": "Idaho",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.1,
"Adult_Obesity_Rate": 0.583,
"state": "ID",
"fillKey": 3
},
"IL": {
"State": "Illinois",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.16,
"Adult_Obesity_Rate": 0.582,
"state": "IL",
"fillKey": 3
},
"IN": {
"State": "Indiana",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " Yes ",
"Childhood_Obesity_Rate": 0.16,
"Adult_Obesity_Rate": 0.595,
"state": "IN",
"fillKey": 3
},
"KS": {
"State": "Kansas",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.58,
"state": "KS",
"fillKey": 3
},
"KY": {
"State": "Kentucky",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.21,
"Adult_Obesity_Rate": 0.625,
"state": "KY",
"fillKey": 5
},
"LA": {
"State": "Louisiana",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.17,
"Adult_Obesity_Rate": 0.623,
"state": "LA",
"fillKey": 5
},
"MA": {
"State": "Massachusetts",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.529,
"state": "MA",
"fillKey": 1
},
"MD": {
"State": "Maryland",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " Yes ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.582,
"state": "MD",
"fillKey": 3
},
"ME": {
"State": "Maine",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.569,
"state": "ME",
"fillKey": 3
},
"MI": {
"State": "Michigan",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.605,
"state": "MI",
"fillKey": 4
},
"MN": {
"State": "Minnesota",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.1,
"Adult_Obesity_Rate": 0.594,
"state": "MN",
"fillKey": 3
},
"MO": {
"State": "Missouri",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.16,
"Adult_Obesity_Rate": 0.624,
"state": "MO",
"fillKey": 5
},
"MS": {
"State": "Mississippi",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.18,
"Adult_Obesity_Rate": 0.649,
"state": "MS",
"fillKey": 5
},
"MT": {
"State": "Montana",
"Approach_to_Address_Childhood_Obesity": " Physical education program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.11,
"Adult_Obesity_Rate": 0.547,
"state": "MT",
"fillKey": 2
},
"NC": {
"State": "North Carolina",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.19,
"Adult_Obesity_Rate": 0.594,
"state": "NC",
"fillKey": 3
},
"ND": {
"State": "North Dakota",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.62,
"state": "ND",
"fillKey": 4
},
"NE": {
"State": "Nebraska",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.602,
"state": "NE",
"fillKey": 4
},
"NH": {
"State": "New Hampshire",
"Approach_to_Address_Childhood_Obesity": " Physical education program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.574,
"state": "NH",
"fillKey": 3
},
"NJ": {
"State": "New Jersey",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.553,
"state": "NJ",
"fillKey": 2
},
"NM": {
"State": "New Mexico",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.17,
"Adult_Obesity_Rate": 0.582,
"state": "NM",
"fillKey": 3
},
"NV": {
"State": "Nevada",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.562,
"state": "NV",
"fillKey": 2
},
"NY": {
"State": "New York",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.15,
"Adult_Obesity_Rate": 0.568,
"state": "NY",
"fillKey": 3
},
"OH": {
"State": "Ohio",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.603,
"state": "OH",
"fillKey": 4
},
"OK": {
"State": "Oklahoma",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.15,
"Adult_Obesity_Rate": 0.606,
"state": "OK",
"fillKey": 4
},
"OR": {
"State": "Oregon",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.565,
"state": "OR",
"fillKey": 2
},
"PA": {
"State": "Pennsylvania",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.13,
"Adult_Obesity_Rate": 0.592,
"state": "PA",
"fillKey": 3
},
"RI": {
"State": "Rhode Island",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.558,
"state": "RI",
"fillKey": 2
},
"SC": {
"State": "South Carolina",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.19,
"Adult_Obesity_Rate": 0.623,
"state": "SC",
"fillKey": 5
},
"SD": {
"State": "South Dakota",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.12,
"Adult_Obesity_Rate": 0.607,
"state": "SD",
"fillKey": 4
},
"TN": {
"State": "Tennessee",
"Approach_to_Address_Childhood_Obesity": " School nutrition program ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.2,
"Adult_Obesity_Rate": 0.593,
"state": "TN",
"fillKey": 3
},
"TX": {
"State": "Texas",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.19,
"Adult_Obesity_Rate": 0.588,
"state": "TX",
"fillKey": 3
},
"UT": {
"State": "Utah",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.11,
"Adult_Obesity_Rate": 0.543,
"state": "UT",
"fillKey": 2
},
"VA": {
"State": "Virginia",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " Yes ",
"Childhood_Obesity_Rate": 0.11,
"Adult_Obesity_Rate": 0.589,
"state": "VA",
"fillKey": 3
},
"VT": {
"State": "Vermont",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.542,
"state": "VT",
"fillKey": 2
},
"WA": {
"State": "Washington",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.21,
"Adult_Obesity_Rate": 0.565,
"state": "WA",
"fillKey": 2
},
"WI": {
"State": "Wisconsin",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.09,
"Adult_Obesity_Rate": 0.591,
"state": "WI",
"fillKey": 3
},
"WV": {
"State": "West Virginia",
"Approach_to_Address_Childhood_Obesity": " Both ",
"State_Task_Force_Committee": " Yes ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.14,
"Adult_Obesity_Rate": 0.636,
"state": "WV",
"fillKey": 5
},
"WY": {
"State": "Wyoming",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " Yes ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.15,
"Adult_Obesity_Rate": 0.596,
"state": "WY",
"fillKey": 4
},
"NA": {
"State": "District of Columbia",
"Approach_to_Address_Childhood_Obesity": " None ",
"State_Task_Force_Committee": " No ",
"Mandates_BMI_Screening": " No ",
"Mandates_Obesity_Treatment_Coverage": " No ",
"Childhood_Obesity_Rate": 0.23,
"Adult_Obesity_Rate": 0.521,
"state": null,
"fillKey": 1
}
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