Created
December 16, 2022 10:20
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openmm-cuda-log
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| this derivation will be built: | |
| /nix/store/ws0fgn9a6iihg9vay7sw8c5g7hmh6all-openmm-7.7.0.drv | |
| building '/nix/store/ws0fgn9a6iihg9vay7sw8c5g7hmh6all-openmm-7.7.0.drv'... | |
| unpacking sources | |
| unpacking source archive /nix/store/w7ass34il7988549lxmdbflb7850p9nc-source | |
| source root is source | |
| patching sources | |
| configuring | |
| fixing cmake files... | |
| cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LOCALEDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/share/doc/OpenMM -DCMAKE_INSTALL_INFODIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/share/man -DCMAKE_INSTALL_OLDINCLUDEDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/include -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/include -DCMAKE_INSTALL_SBINDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_OSX_SYSROOT= -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/ibgmf54z6dnqd1cnf873xn90l2cajmal-gfortran-wrapper-11.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/ibgmf54z6dnqd1cnf873xn90l2cajmal-gfortran-wrapper-11.3.0/bin/ranlib -DCMAKE_AR=/nix/store/ibgmf54z6dnqd1cnf873xn90l2cajmal-gfortran-wrapper-11.3.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/hxbj85vvfzgpqsckl8gy9ghn12idyr7z-openmm-7.7.0 -DBUILD_TESTING=ON -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_CPU_LIB=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_PME_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_SHARED_LIB=ON -DCMAKE_C_COMPILER=/nix/store/pxh842csix4gj9vwxn2crymn4nwp72wn-clang-wrapper-11.1.0/bin/clang -DCMAKE_CXX_COMPILER=/nix/store/pxh842csix4gj9vwxn2crymn4nwp72wn-clang-wrapper-11.1.0/bin/clang++ -DCUDA_SDK_ROOT_DIR=/nix/store/v5in9f4ibaiwx3v7vdb6in0f7yv19k9j-cudatoolkit-11.7.0 -DOPENMM_BUILD_AMOEBA_CUDA_LIB=ON -DOPENMM_BUILD_CUDA_LIB=ON -DOPENMM_BUILD_DRUDE_CUDA_LIB=ON -DOPENMM_BUILD_RPMD_CUDA_LIB=ON -DCMAKE_LIBRARY_PATH=/nix/store/v5in9f4ibaiwx3v7vdb6in0f7yv19k9j-cudatoolkit-11.7.0/lib64/stubs -DCUDA_TOOLKIT_ROOT_DIR=/nix/store/v5in9f4ibaiwx3v7vdb6in0f7yv19k9j-cudatoolkit-11.7.0 -DCUDA_HOST_COMPILER=/nix/store/2gz0wl2dc1lgdh0vdpigr0k8dhr89786-gcc-wrapper-11.3.0/bin | |
| -- Found PythonInterp: /nix/store/nzgqxw4d875pgl1lji8n3q82x3bf7ldi-python3-3.10.8/bin/python (found version "3.10.8") | |
| -- The C compiler identification is Clang 11.1.0 | |
| -- The CXX compiler identification is Clang 11.1.0 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /nix/store/pxh842csix4gj9vwxn2crymn4nwp72wn-clang-wrapper-11.1.0/bin/clang - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /nix/store/pxh842csix4gj9vwxn2crymn4nwp72wn-clang-wrapper-11.1.0/bin/clang++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): | |
| The OLD behavior for policy CMP0042 will be removed from a future version | |
| of CMake. | |
| The cmake-policies(7) manual explains that the OLD behaviors of all | |
| policies are deprecated and that a policy should be set to OLD only under | |
| specific short-term circumstances. Projects should be ported to the NEW | |
| behavior and not rely on setting a policy to OLD. | |
| -- Found Doxygen: /nix/store/yh7jgnrxmx8i5za24i0lmy4yzl1pcx2r-doxygen-1.9.5/bin/doxygen (found version "1.9.5") found components: doxygen missing components: dot | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| CMake Warning (dev) at /nix/store/vh76h64xifdiylk1dfc9s6mgpzazngxs-cmake-3.24.3/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): | |
| The package name passed to `find_package_handle_standard_args` (OPENCL) | |
| does not match the name of the calling package (OpenCL). This can lead to | |
| problems in calling code that expects `find_package` result variables | |
| (e.g., `_FOUND`) to follow a certain pattern. | |
| Call Stack (most recent call first): | |
| cmake_modules/FindOpenCL.cmake:86 (find_package_handle_standard_args) | |
| CMakeLists.txt:343 (FIND_PACKAGE) | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- Could NOT find OPENCL (missing: OPENCL_LIBRARY) | |
| -- Configuring done | |
| -- Generating done | |
| CMake Warning: | |
| Manually-specified variables were not used by the project: | |
| CMAKE_EXPORT_NO_PACKAGE_REGISTRY | |
| CMAKE_INSTALL_BINDIR | |
| CMAKE_INSTALL_DOCDIR | |
| CMAKE_INSTALL_INCLUDEDIR | |
| CMAKE_INSTALL_INFODIR | |
| CMAKE_INSTALL_LIBDIR | |
| CMAKE_INSTALL_LIBEXECDIR | |
| CMAKE_INSTALL_LOCALEDIR | |
| CMAKE_INSTALL_MANDIR | |
| CMAKE_INSTALL_OLDINCLUDEDIR | |
| CMAKE_INSTALL_SBINDIR | |
| CMAKE_POLICY_DEFAULT_CMP0025 | |
| CUDA_HOST_COMPILER | |
| CUDA_SDK_ROOT_DIR | |
| -- Build files have been written to: /build/source/build | |
| cmake: enabled parallel building | |
| building | |
| build flags: -j12 SHELL=/nix/store/nfgpn9av331q7zi1dl6d5qpir60y513s-bash-5.1-p16/bin/bash | |
| [ 0%] Generating src/CommonRpmdKernelSources.cpp, src/CommonRpmdKernelSources.h | |
| [ 0%] Parsing OpenMM header files with Doxygen... | |
| [ 1%] Generating src/CommonDrudeKernelSources.cpp, src/CommonDrudeKernelSources.h | |
| [ 1%] Generating src/CommonKernelSources.cpp, src/CommonKernelSources.h | |
| [ 1%] Parsing OpenMM header files with Doxygen... | |
| warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'COLS_IN_ALPHA_INDEX' at line 754 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'HTML_ALIGN_MEMBERS' at line 809 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'LATEX_SOURCE_CODE' at line 1058 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'XML_SCHEMA' at line 1150 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'XML_DTD' at line 1156 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'PERL_PATH' at line 1321 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'CLASS_DIAGRAMS' at line 1334 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'MSCGEN_PATH' at line 1343 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_FONTNAME' at line 1367 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_FONTSIZE' at line 1372 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_TRANSPARENT' at line 1496 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value | |
| Using the default: a4! | |
| warning: doxygen no longer ships with the FreeSans font. | |
| You may want to clear or change DOT_FONTNAME. | |
| Otherwise you run the risk that the wrong font is being used for dot generated graphs. | |
| Doxygen version used: 1.9.5 | |
| [ 1%] Generating src/CommonAmoebaKernelSources.cpp, src/CommonAmoebaKernelSources.h | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/__init__.py to /build/source/build/python/openmm/__init__.py | |
| [ 1%] CMake-copying file /build/source/wrappers/python/MANIFEST.in to /build/source/build/python/MANIFEST.in | |
| Searching for include files... | |
| Searching for example files... | |
| Searching for images... | |
| Searching for dot files... | |
| Searching for msc files... | |
| Searching for dia files... | |
| Searching for files to exclude | |
| Searching INPUT for files to process... | |
| Searching for files in directory /build/source/openmmapi | |
| Searching for files in directory /build/source/openmmapi/src | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/amd.py to /build/source/build/python/openmm/amd.py | |
| warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/__init__.py to /build/source/build/python/openmm/app/__init__.py | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/amberinpcrdfile.py to /build/source/build/python/openmm/app/amberinpcrdfile.py | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/amberprmtopfile.py to /build/source/build/python/openmm/app/amberprmtopfile.py | |
| warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| Searching for files in directory /build/source/openmmapi/include | |
| Searching for files in directory /build/source/openmmapi/include/openmm | |
| warning: Tag 'COLS_IN_ALPHA_INDEX' at line 748 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| Searching for files in directory /build/source/openmmapi/include/openmm/internal | |
| warning: Tag 'HTML_ALIGN_MEMBERS' at line 803 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'LATEX_SOURCE_CODE' at line 1052 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'XML_SCHEMA' at line 1144 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'XML_DTD' at line 1150 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'PERL_PATH' at line 1315 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'CLASS_DIAGRAMS' at line 1328 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'MSCGEN_PATH' at line 1337 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_FONTNAME' at line 1361 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_FONTSIZE' at line 1366 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_TRANSPARENT' at line 1490 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value | |
| Using the default: a4! | |
| warning: doxygen no longer ships with the FreeSans font. | |
| You may want to clear or change DOT_FONTNAME. | |
| Otherwise you run the risk that the wrong font is being used for dot generated graphs. | |
| Doxygen version used: 1.9.5 | |
| Reading and parsing tag files | |
| Parsing files | |
| Preprocessing /build/source/openmmapi/include/OpenMM.h... | |
| Searching for include files... | |
| Searching for example files... | |
| Searching for images... | |
| Searching for dot files... | |
| Searching for msc files... | |
| Searching for dia files... | |
| Searching for files to exclude | |
| Searching INPUT for files to process... | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/src | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/include | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/include/openmm | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/include/openmm/internal | |
| Reading and parsing tag files | |
| Parsing files | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/charmmparameterset.py to /build/source/build/python/openmm/app/charmmparameterset.py | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/charmmcrdfiles.py to /build/source/build/python/openmm/app/charmmcrdfiles.py | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/charmmpsffile.py to /build/source/build/python/openmm/app/charmmpsffile.py | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/checkpointreporter.py to /build/source/build/python/openmm/app/checkpointreporter.py | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/data/DLPC.pdb to /build/source/build/python/openmm/app/data/DLPC.pdb | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/data/DLPE.pdb to /build/source/build/python/openmm/app/data/DLPE.pdb | |
| [ 1%] Built target DrudeCommonKernels | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| Parsing file /build/source/openmmapi/include/OpenMM.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| [ 1%] Built target RpmdCommonKernels | |
| [ 1%] CMake-copying file /build/source/wrappers/python/openmm/app/data/DMPC.pdb to /build/source/build/python/openmm/app/data/DMPC.pdb | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| Building macro definition list... | |
| Building group list... | |
| Building directory list... | |
| Building namespace list... | |
| Building file list... | |
| Building class list... | |
| Preprocessing /build/source/openmmapi/include/openmm/Context.h... | |
| Building concept list... | |
| Computing nesting relations for classes... | |
| Associating documentation with classes... | |
| Associating documentation with concepts... | |
| Building example list... | |
| Searching for enumerations... | |
| Searching for documented typedefs... | |
| Searching for members imported via using declarations... | |
| Searching for included using directives... | |
| Searching for documented variables... | |
| Parsing file /build/source/openmmapi/include/openmm/Context.h... | |
| Building interface member list... | |
| Building member list... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| Searching for friends... | |
| Searching for documented defines... | |
| Computing class inheritance relations... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/DOPC.pdb to /build/source/build/python/openmm/app/data/DOPC.pdb | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/DPPC.pdb to /build/source/build/python/openmm/app/data/DPPC.pdb | |
| Computing class usage relations... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Flushing cached template relations that have become invalid... | |
| Computing class relations... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Add enum values to enums... | |
| Searching for member function documentation... | |
| Creating members for template instances... | |
| Building page list... | |
| Search for main page... | |
| Computing page relations... | |
| Determining the scope of groups... | |
| Sorting lists... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/POPC.pdb to /build/source/build/python/openmm/app/data/POPC.pdb | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/POPE.pdb to /build/source/build/python/openmm/app/data/POPE.pdb | |
| Determining which enums are documented | |
| Computing member relations... | |
| Building full member lists recursively... | |
| Adding members to member groups. | |
| Computing member references... | |
| Inheriting documentation... | |
| Generating disk names... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| Adding source references... | |
| Adding xrefitems... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| Sorting member lists... | |
| Setting anonymous enum type... | |
| Computing dependencies between directories... | |
| Generating citations page... | |
| Counting members... | |
| Counting data structures... | |
| Resolving user defined references... | |
| Finding anchors and sections in the documentation... | |
| Transferring function references... | |
| Combining using relations... | |
| Adding members to index pages... | |
| [ 3%] Built target CommonKernels | |
| Correcting members for VHDL... | |
| Computing tooltip texts... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| Generating style sheet... | |
| Generating search indices... | |
| Generating example documentation... | |
| Generating file sources... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber03_obc.xml to /build/source/build/python/openmm/app/data/amber03_obc.xml | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber03.xml to /build/source/build/python/openmm/app/data/amber03.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber10.xml to /build/source/build/python/openmm/app/data/amber10.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber10_obc.xml to /build/source/build/python/openmm/app/data/amber10_obc.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| Generating file documentation... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| Generating docs for file /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| Generating page documentation... | |
| Generating docs for page deprecated... | |
| Generating group documentation... | |
| Generating class documentation... | |
| Generating concept documentation... | |
| Generating namespace index... | |
| Generating docs for namespace OpenMM | |
| Generating docs for compound OpenMM::AmoebaGeneralizedKirkwoodForce... | |
| [ 3%] Built target AmoebaCommonKernels | |
| Parsing file /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| Generating docs for compound OpenMM::AmoebaMultipoleForce... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14-all.xml to /build/source/build/python/openmm/app/data/amber14-all.xml | |
| Generating docs for compound OpenMM::AmoebaTorsionTorsionForce... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/absinth.xml to /build/source/build/python/openmm/app/data/absinth.xml | |
| Generating docs for compound OpenMM::AmoebaVdwForce... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/DNA.bsc1.xml to /build/source/build/python/openmm/app/data/amber14/DNA.bsc1.xml | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/GLYCAM_06j-1.xml to /build/source/build/python/openmm/app/data/amber14/GLYCAM_06j-1.xml | |
| Generating docs for compound OpenMM::AmoebaWcaDispersionForce... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/DNA.OL15.xml to /build/source/build/python/openmm/app/data/amber14/DNA.OL15.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating docs for compound OpenMM::HippoNonbondedForce... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating graph info page... | |
| Generating directory documentation... | |
| finalizing index lists... | |
| writing tag file... | |
| Generating XML output... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/RNA.OL3.xml to /build/source/build/python/openmm/app/data/amber14/RNA.OL3.xml | |
| Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| Generating XML output for class OpenMM::AmoebaMultipoleForce | |
| Parsing file /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/protein.ff14SB.xml to /build/source/build/python/openmm/app/data/amber14/protein.ff14SB.xml | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/protein.ff15ipq.xml to /build/source/build/python/openmm/app/data/amber14/protein.ff15ipq.xml | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/spce.xml to /build/source/build/python/openmm/app/data/amber14/spce.xml | |
| Generating XML output for class OpenMM::AmoebaTorsionTorsionForce | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/tip3p.xml to /build/source/build/python/openmm/app/data/amber14/tip3p.xml | |
| Parsing file /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| Generating XML output for class OpenMM::AmoebaVdwForce | |
| [ 3%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/tip3pfb.xml to /build/source/build/python/openmm/app/data/amber14/tip3pfb.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/tip4pew.xml to /build/source/build/python/openmm/app/data/amber14/tip4pew.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/tip4pfb.xml to /build/source/build/python/openmm/app/data/amber14/tip4pfb.xml | |
| Generating XML output for class OpenMM::AmoebaWcaDispersionForce | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber96.xml to /build/source/build/python/openmm/app/data/amber96.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber14/lipid17.xml to /build/source/build/python/openmm/app/data/amber14/lipid17.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber96_obc.xml to /build/source/build/python/openmm/app/data/amber96_obc.xml | |
| Generating XML output for class OpenMM::HippoNonbondedForce::ExceptionInfo | |
| Generating XML output for class OpenMM::HippoNonbondedForce | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber99Test.xml to /build/source/build/python/openmm/app/data/amber99Test.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/Force.h... | |
| Parsing file /build/source/openmmapi/include/openmm/Force.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber99_obc.xml to /build/source/build/python/openmm/app/data/amber99_obc.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| Generating XML output for class OpenMM::AmoebaMultipoleForce::MultipoleInfo | |
| Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce::ParticleInfo | |
| Parsing file /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| Generating XML output for class OpenMM::HippoNonbondedForce::ParticleInfo | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber99sb.xml to /build/source/build/python/openmm/app/data/amber99sb.xml | |
| Generating XML output for class OpenMM::AmoebaVdwForce::ParticleTypeInfo | |
| Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionGridInfo | |
| Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionInfo | |
| Generating XML output for class OpenMM::AmoebaVdwForce::TypePairInfo | |
| Generating XML output for class OpenMM::AmoebaVdwForce::VdwInfo | |
| Generating XML output for class OpenMM::AmoebaWcaDispersionForce::WcaDispersionInfo | |
| Generating XML output for namespace OpenMM | |
| Generating XML output for file AmoebaGeneralizedKirkwoodForce.h | |
| Generating XML output for file AmoebaMultipoleForce.h | |
| Generating XML output for file AmoebaTorsionTorsionForce.h | |
| Generating XML output for file AmoebaVdwForce.h | |
| Generating XML output for file AmoebaWcaDispersionForce.h | |
| Generating XML output for file HippoNonbondedForce.h | |
| Generating XML output for file OpenMMAmoeba.h | |
| Generating XML output for page deprecated | |
| Generate XML output for dir /build/source/plugins/amoeba/ | |
| Generate XML output for dir /build/source/plugins/amoeba/openmmapi/include/ | |
| Generate XML output for dir /build/source/plugins/amoeba/openmmapi/include/openmm/ | |
| Generate XML output for dir /build/source/plugins/amoeba/openmmapi/ | |
| Generate XML output for dir /build/source/plugins/ | |
| Preprocessing /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| Running plantuml with JAVA... | |
| type lookup cache used 488/65536 hits=857 misses=504 | |
| symbol lookup cache used 536/65536 hits=3869 misses=536 | |
| finished... | |
| Parsing file /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber99sbildn.xml to /build/source/build/python/openmm/app/data/amber99sbildn.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amberfb15.xml to /build/source/build/python/openmm/app/data/amberfb15.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amber99sbnmr.xml to /build/source/build/python/openmm/app/data/amber99sbnmr.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/Integrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/Integrator.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amoeba2009.xml to /build/source/build/python/openmm/app/data/amoeba2009.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amoeba2013.xml to /build/source/build/python/openmm/app/data/amoeba2013.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amoeba2009_gk.xml to /build/source/build/python/openmm/app/data/amoeba2009_gk.xml | |
| Parsing file /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Parsing file /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amoeba2013_gk.xml to /build/source/build/python/openmm/app/data/amoeba2013_gk.xml | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| [ 5%] Generating AmoebaOpenMMCWrapper.h, AmoebaOpenMMCWrapper.cpp, AmoebaOpenMMFortranModule.f90, AmoebaOpenMMFortranWrapper.cpp | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amoeba2018.xml to /build/source/build/python/openmm/app/data/amoeba2018.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36.xml to /build/source/build/python/openmm/app/data/charmm36.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/spce.xml to /build/source/build/python/openmm/app/data/charmm36/spce.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/amoeba2018_gk.xml to /build/source/build/python/openmm/app/data/amoeba2018_gk.xml | |
| [ 5%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/tip3p-pme-b.xml to /build/source/build/python/openmm/app/data/charmm36/tip3p-pme-b.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/tip3p-pme-f.xml to /build/source/build/python/openmm/app/data/charmm36/tip3p-pme-f.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/tip4p2005.xml to /build/source/build/python/openmm/app/data/charmm36/tip4p2005.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/tip4pew.xml to /build/source/build/python/openmm/app/data/charmm36/tip4pew.xml | |
| Parsing file /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Parsing file /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/tip5p.xml to /build/source/build/python/openmm/app/data/charmm36/tip5p.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/tip5pew.xml to /build/source/build/python/openmm/app/data/charmm36/tip5pew.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/State.h... | |
| Parsing file /build/source/openmmapi/include/openmm/State.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/System.h... | |
| Parsing file /build/source/openmmapi/include/openmm/System.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm36/water.xml to /build/source/build/python/openmm/app/data/charmm36/water.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| Parsing file /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm_polar_2019.xml to /build/source/build/python/openmm/app/data/charmm_polar_2019.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/glycam-hydrogens.xml to /build/source/build/python/openmm/app/data/glycam-hydrogens.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/iamoeba.xml to /build/source/build/python/openmm/app/data/iamoeba.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/hydrogens.xml to /build/source/build/python/openmm/app/data/hydrogens.xml | |
| Preprocessing /build/source/openmmapi/include/openmm/Units.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/implicit/gbn.xml to /build/source/build/python/openmm/app/data/implicit/gbn.xml | |
| Parsing file /build/source/openmmapi/include/openmm/Units.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/Vec3.h... | |
| Parsing file /build/source/openmmapi/include/openmm/Vec3.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Parsing file /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Preprocessing /build/source/olla/include/openmm/Platform.h... | |
| Parsing file /build/source/olla/include/openmm/Platform.h... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/implicit/gbn2.xml to /build/source/build/python/openmm/app/data/implicit/gbn2.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/implicit/hct.xml to /build/source/build/python/openmm/app/data/implicit/hct.xml | |
| Building macro definition list... | |
| Building group list... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/charmm_polar_2013.xml to /build/source/build/python/openmm/app/data/charmm_polar_2013.xml | |
| Building directory list... | |
| Building namespace list... | |
| Building file list... | |
| Building class list... | |
| Building concept list... | |
| Computing nesting relations for classes... | |
| Associating documentation with classes... | |
| Associating documentation with concepts... | |
| Building example list... | |
| Searching for enumerations... | |
| Searching for documented typedefs... | |
| Searching for members imported via using declarations... | |
| Searching for included using directives... | |
| Searching for documented variables... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/implicit/obc2.xml to /build/source/build/python/openmm/app/data/implicit/obc2.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/residues.xml to /build/source/build/python/openmm/app/data/residues.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/pdbNames.xml to /build/source/build/python/openmm/app/data/pdbNames.xml | |
| Building interface member list... | |
| Building member list... | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/implicit/obc1.xml to /build/source/build/python/openmm/app/data/implicit/obc1.xml | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/spce.pdb to /build/source/build/python/openmm/app/data/spce.pdb | |
| [ 7%] CMake-copying file /build/source/wrappers/python/openmm/app/data/spce.xml to /build/source/build/python/openmm/app/data/spce.xml | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/swm4ndp.xml to /build/source/build/python/openmm/app/data/swm4ndp.xml | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/test.pdb to /build/source/build/python/openmm/app/data/test.pdb | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip3p.pdb to /build/source/build/python/openmm/app/data/tip3p.pdb | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip3pfb.xml to /build/source/build/python/openmm/app/data/tip3pfb.xml | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip3p.xml to /build/source/build/python/openmm/app/data/tip3p.xml | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip4pew.pdb to /build/source/build/python/openmm/app/data/tip4pew.pdb | |
| Searching for friends... | |
| Searching for documented defines... | |
| Computing class inheritance relations... | |
| Computing class usage relations... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip4pew.xml to /build/source/build/python/openmm/app/data/tip4pew.xml | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip5p.xml to /build/source/build/python/openmm/app/data/tip5p.xml | |
| Flushing cached template relations that have become invalid... | |
| Computing class relations... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip5p.pdb to /build/source/build/python/openmm/app/data/tip5p.pdb | |
| Add enum values to enums... | |
| Searching for member function documentation... | |
| Creating members for template instances... | |
| Building page list... | |
| Search for main page... | |
| Computing page relations... | |
| Determining the scope of groups... | |
| Sorting lists... | |
| Determining which enums are documented | |
| Computing member relations... | |
| Building full member lists recursively... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/dcdfile.py to /build/source/build/python/openmm/app/dcdfile.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/data/tip4pfb.xml to /build/source/build/python/openmm/app/data/tip4pfb.xml | |
| Adding members to member groups. | |
| Computing member references... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/desmonddmsfile.py to /build/source/build/python/openmm/app/desmonddmsfile.py | |
| Inheriting documentation... | |
| Generating disk names... | |
| Adding source references... | |
| Adding xrefitems... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/element.py to /build/source/build/python/openmm/app/element.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/dcdreporter.py to /build/source/build/python/openmm/app/dcdreporter.py | |
| Sorting member lists... | |
| Setting anonymous enum type... | |
| Computing dependencies between directories... | |
| Generating citations page... | |
| Counting members... | |
| Counting data structures... | |
| Resolving user defined references... | |
| Finding anchors and sections in the documentation... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/forcefield.py to /build/source/build/python/openmm/app/forcefield.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/gromacsgrofile.py to /build/source/build/python/openmm/app/gromacsgrofile.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/__init__.py to /build/source/build/python/openmm/app/internal/__init__.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/amber_file_parser.py to /build/source/build/python/openmm/app/internal/amber_file_parser.py | |
| Transferring function references... | |
| Combining using relations... | |
| Adding members to index pages... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/gromacstopfile.py to /build/source/build/python/openmm/app/gromacstopfile.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/charmm/__init__.py to /build/source/build/python/openmm/app/internal/charmm/__init__.py | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/charmm/_charmmfile.py to /build/source/build/python/openmm/app/internal/charmm/_charmmfile.py | |
| Correcting members for VHDL... | |
| Computing tooltip texts... | |
| Generating style sheet... | |
| Generating search indices... | |
| Generating example documentation... | |
| Generating file sources... | |
| Generating code for file /build/source/olla/include/openmm/Platform.h... | |
| Generating code for file /build/source/openmmapi/include/OpenMM.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/compiled.pyx to /build/source/build/python/openmm/app/internal/compiled.pyx | |
| Generating code for file /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| [ 9%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/customgbforces.py to /build/source/build/python/openmm/app/internal/customgbforces.py | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/argtracker.py to /build/source/build/python/openmm/app/internal/argtracker.py | |
| Generating code for file /build/source/openmmapi/include/openmm/Context.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/charmm/topologyobjects.py to /build/source/build/python/openmm/app/internal/charmm/topologyobjects.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbstructure.py to /build/source/build/python/openmm/app/internal/pdbstructure.py | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/charmm/exceptions.py to /build/source/build/python/openmm/app/internal/charmm/exceptions.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/__init__.py to /build/source/build/python/openmm/app/internal/pdbx/__init__.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/reader/PdbxParser.py to /build/source/build/python/openmm/app/internal/pdbx/reader/PdbxParser.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/reader/PdbxContainers.py to /build/source/build/python/openmm/app/internal/pdbx/reader/PdbxContainers.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to /build/source/build/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to /build/source/build/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReader.py to /build/source/build/python/openmm/app/internal/pdbx/reader/PdbxReader.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriter.py to /build/source/build/python/openmm/app/internal/pdbx/writer/PdbxWriter.py | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to /build/source/build/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/writer/__init__.py to /build/source/build/python/openmm/app/internal/pdbx/writer/__init__.py | |
| Generating code for file /build/source/openmmapi/include/openmm/Force.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| [ 11%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/pdbx/reader/__init__.py to /build/source/build/python/openmm/app/internal/pdbx/reader/__init__.py | |
| Generating code for file /build/source/openmmapi/include/openmm/Integrator.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/unitcell.py to /build/source/build/python/openmm/app/internal/unitcell.py | |
| Generating code for file /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/internal/singleton.py to /build/source/build/python/openmm/app/internal/singleton.py | |
| Generating code for file /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/metadynamics.py to /build/source/build/python/openmm/app/metadynamics.py | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/modeller.py to /build/source/build/python/openmm/app/modeller.py | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/pdbfile.py to /build/source/build/python/openmm/app/pdbfile.py | |
| Generating code for file /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/pdbreporter.py to /build/source/build/python/openmm/app/pdbreporter.py | |
| Generating code for file /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/State.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/System.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/pdbxfile.py to /build/source/build/python/openmm/app/pdbxfile.py | |
| Generating code for file /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/Units.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/Vec3.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/simulatedtempering.py to /build/source/build/python/openmm/app/simulatedtempering.py | |
| Generating code for file /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Generating file documentation... | |
| Generating docs for file /build/source/olla/include/openmm/Platform.h... | |
| Generating docs for file /build/source/openmmapi/include/OpenMM.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/simulation.py to /build/source/build/python/openmm/app/simulation.py | |
| Generating docs for file /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/Context.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/Force.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/topology.py to /build/source/build/python/openmm/app/topology.py | |
| Generating docs for file /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/Integrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/State.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/System.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/Units.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/Vec3.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| Generating docs for file /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Generating page documentation... | |
| Generating docs for page deprecated... | |
| Generating group documentation... | |
| Generating class documentation... | |
| Generating concept documentation... | |
| Generating namespace index... | |
| Generating docs for namespace OpenMM | |
| Generating docs for compound OpenMM::AndersenThermostat... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/mtsintegrator.py to /build/source/build/python/openmm/mtsintegrator.py | |
| Generating docs for compound OpenMM::BrownianIntegrator... | |
| Generating docs for compound OpenMM::CMAPTorsionForce... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i to /build/source/build/python/src/swig_doxygen/swig_lib/python/typemaps.i | |
| Generating docs for compound OpenMM::CMMotionRemover... | |
| Generating docs for compound OpenMM::CompoundIntegrator... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/OpenMM.i to /build/source/build/python/src/swig_doxygen/OpenMM.i | |
| [ 13%] Parsing OpenMM header files with doxygen... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/app/statedatareporter.py to /build/source/build/python/openmm/app/statedatareporter.py | |
| Generating docs for compound OpenMM::Context... | |
| Generating docs for compound OpenMM::Continuous1DFunction... | |
| Generating docs for compound OpenMM::Continuous2DFunction... | |
| Generating docs for compound OpenMM::Continuous3DFunction... | |
| Generating docs for compound OpenMM::CustomAngleForce... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swigInputConfig.py to /build/source/build/python/src/swig_doxygen/swigInputConfig.py | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swigInputBuilder.py to /build/source/build/python/src/swig_doxygen/swigInputBuilder.py | |
| Generating docs for compound OpenMM::CustomBondForce... | |
| warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'COLS_IN_ALPHA_INDEX' at line 762 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'HTML_ALIGN_MEMBERS' at line 817 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'LATEX_SOURCE_CODE' at line 1066 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'XML_SCHEMA' at line 1158 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'XML_DTD' at line 1164 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'PERL_PATH' at line 1329 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'CLASS_DIAGRAMS' at line 1342 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'MSCGEN_PATH' at line 1351 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_FONTNAME' at line 1375 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_FONTSIZE' at line 1380 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: Tag 'DOT_TRANSPARENT' at line 1504 of file 'Doxyfile' has become obsolete. | |
| To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" | |
| warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value | |
| Using the default: a4! | |
| Generating docs for compound OpenMM::CustomCentroidBondForce... | |
| warning: doxygen no longer ships with the FreeSans font. | |
| You may want to clear or change DOT_FONTNAME. | |
| Otherwise you run the risk that the wrong font is being used for dot generated graphs. | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i to /build/source/build/python/src/swig_doxygen/swig_lib/python/exceptions.i | |
| Generating docs for compound OpenMM::CustomCompoundBondForce... | |
| Doxygen version used: 1.9.5 | |
| Searching for include files... | |
| Searching for example files... | |
| Searching for images... | |
| Searching for dot files... | |
| Searching for msc files... | |
| Searching for dia files... | |
| Searching for files to exclude | |
| Searching INPUT for files to process... | |
| Searching for files in directory /build/source/openmmapi | |
| Searching for files in directory /build/source/openmmapi/src | |
| Searching for files in directory /build/source/openmmapi/include | |
| Generating docs for compound OpenMM::CustomCVForce... | |
| Searching for files in directory /build/source/openmmapi/include/openmm | |
| Searching for files in directory /build/source/openmmapi/include/openmm/internal | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i to /build/source/build/python/src/swig_doxygen/swig_lib/python/extend.i | |
| Generating docs for compound OpenMM::CustomExternalForce... | |
| Generating docs for compound OpenMM::CustomGBForce... | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/src | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/include | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/include/openmm | |
| Searching for files in directory /build/source/plugins/amoeba/openmmapi/include/openmm/internal | |
| Searching for files in directory /build/source/plugins/rpmd/openmmapi | |
| Searching for files in directory /build/source/plugins/rpmd/openmmapi/src | |
| Generating docs for compound OpenMM::CustomHbondForce... | |
| Searching for files in directory /build/source/plugins/rpmd/openmmapi/include | |
| Searching for files in directory /build/source/plugins/rpmd/openmmapi/include/openmm | |
| Searching for files in directory /build/source/plugins/rpmd/openmmapi/include/openmm/internal | |
| Searching for files in directory /build/source/plugins/drude/openmmapi | |
| Searching for files in directory /build/source/plugins/drude/openmmapi/src | |
| Searching for files in directory /build/source/plugins/drude/openmmapi/include | |
| Searching for files in directory /build/source/plugins/drude/openmmapi/include/openmm | |
| Searching for files in directory /build/source/plugins/drude/openmmapi/include/openmm/internal | |
| Reading and parsing tag files | |
| Parsing files | |
| Preprocessing /build/source/openmmapi/include/OpenMM.h... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swig_lib/python/header.i to /build/source/build/python/src/swig_doxygen/swig_lib/python/header.i | |
| Generating docs for compound OpenMM::CustomIntegrator... | |
| [ 13%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swig_lib/python/features.i to /build/source/build/python/src/swig_doxygen/swig_lib/python/features.i | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/unit/__init__.py to /build/source/build/python/openmm/unit/__init__.py | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/unit/basedimension.py to /build/source/build/python/openmm/unit/basedimension.py | |
| [ 13%] CMake-copying file /build/source/wrappers/python/openmm/testInstallation.py to /build/source/build/python/openmm/testInstallation.py | |
| Generating docs for compound OpenMM::CustomManyParticleForce... | |
| [ 15%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i to /build/source/build/python/src/swig_doxygen/swig_lib/python/pythoncode.i | |
| Generating docs for compound OpenMM::CustomNonbondedForce... | |
| Generating docs for compound OpenMM::CustomTorsionForce... | |
| [ 15%] CMake-copying file /build/source/wrappers/python/openmm/unit/baseunit.py to /build/source/build/python/openmm/unit/baseunit.py | |
| Generating docs for compound OpenMM::Discrete1DFunction... | |
| Generating docs for compound OpenMM::Discrete2DFunction... | |
| Generating docs for compound OpenMM::Discrete3DFunction... | |
| Generating docs for compound OpenMM::Force... | |
| Generating docs for compound OpenMM::GayBerneForce... | |
| [ 15%] CMake-copying file /build/source/wrappers/python/openmm/unit/constants.py to /build/source/build/python/openmm/unit/constants.py | |
| Generating docs for compound OpenMM::GBSAOBCForce... | |
| Generating docs for compound OpenMM::HarmonicAngleForce... | |
| Generating docs for compound OpenMM::HarmonicBondForce... | |
| Generating docs for compound OpenMM::Integrator... | |
| [ 15%] CMake-copying file /build/source/wrappers/python/openmm/unit/mymatrix.py to /build/source/build/python/openmm/unit/mymatrix.py | |
| Parsing file /build/source/openmmapi/include/OpenMM.h... | |
| Generating docs for compound OpenMM::LangevinIntegrator... | |
| Preprocessing /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/prefix.py to /build/source/build/python/openmm/unit/prefix.py | |
| Parsing file /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| Generating docs for compound OpenMM::LangevinMiddleIntegrator... | |
| Preprocessing /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Generating docs for compound OpenMM::LocalCoordinatesSite... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/quantity.py to /build/source/build/python/openmm/unit/quantity.py | |
| Preprocessing /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| Generating docs for compound OpenMM::LocalEnergyMinimizer... | |
| Generating docs for compound OpenMM::MonteCarloAnisotropicBarostat... | |
| Parsing file /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| Generating docs for compound OpenMM::MonteCarloBarostat... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/doctests.py to /build/source/build/python/openmm/unit/doctests.py | |
| Generating docs for compound OpenMM::MonteCarloFlexibleBarostat... | |
| Preprocessing /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| Generating docs for compound OpenMM::MonteCarloMembraneBarostat... | |
| Parsing file /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| Generating docs for compound OpenMM::NonbondedForce... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/standard_dimensions.py to /build/source/build/python/openmm/unit/standard_dimensions.py | |
| Preprocessing /build/source/openmmapi/include/openmm/Context.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/unit.py to /build/source/build/python/openmm/unit/unit.py | |
| Parsing file /build/source/openmmapi/include/openmm/Context.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/unit_definitions.py to /build/source/build/python/openmm/unit/unit_definitions.py | |
| Generating docs for compound OpenMM::NoseHooverChain... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| Generating docs for compound OpenMM::NoseHooverIntegrator... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/unit_math.py to /build/source/build/python/openmm/unit/unit_math.py | |
| Generating docs for compound OpenMM::OpenMMException... | |
| Generating docs for compound OpenMM::OutOfPlaneSite... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Generating docs for compound OpenMM::PeriodicTorsionForce... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Generating docs for compound OpenMM::Platform... | |
| Generating docs for compound OpenMM::RBTorsionForce... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| Generating docs for compound OpenMM::RMSDForce... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/unit/unit_operators.py to /build/source/build/python/openmm/unit/unit_operators.py | |
| Parsing file /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| Generating docs for compound OpenMM::State... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/openmm/vec3.py to /build/source/build/python/openmm/vec3.py | |
| Generating docs for compound OpenMM::System... | |
| Generating docs for compound OpenMM::TabulatedFunction... | |
| Generating docs for compound OpenMM::ThreeParticleAverageSite... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/simtk/__init__.py to /build/source/build/python/simtk/__init__.py | |
| Generating docs for compound OpenMM::TwoParticleAverageSite... | |
| Generating docs for compound OpenMM::VariableLangevinIntegrator... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| Generating docs for compound OpenMM::VariableVerletIntegrator... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| Generating docs for compound OpenMM::Vec3... | |
| Generating docs for compound OpenMM::VerletIntegrator... | |
| Generating docs for compound OpenMM::VirtualSite... | |
| Generating graph info page... | |
| Generating directory documentation... | |
| finalizing index lists... | |
| writing tag file... | |
| Generating XML output... | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| Generating XML output for class OpenMM::AndersenThermostat | |
| [ 17%] CMake-copying file /build/source/wrappers/python/simtk/openmm/app/__init__.py to /build/source/build/python/simtk/openmm/app/__init__.py | |
| [ 17%] CMake-copying file /build/source/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh to /build/source/build/python/src/swig_doxygen/doxygen/buildXML.sh | |
| Generating XML output for class OpenMM::CustomAngleForce::AngleInfo | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| Generating XML output for class OpenMM::HarmonicAngleForce::AngleInfo | |
| Generating XML output for class OpenMM::CustomAngleForce::AngleParameterInfo | |
| Generating XML output for class OpenMM::CustomBondForce::BondInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::BondInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::BondInfo | |
| Parsing file /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| Generating XML output for class OpenMM::HarmonicBondForce::BondInfo | |
| Generating XML output for class OpenMM::CustomBondForce::BondParameterInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::BondParameterInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::BondParameterInfo | |
| Generating XML output for class OpenMM::BrownianIntegrator | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/simtk/openmm/__init__.py to /build/source/build/python/simtk/openmm/__init__.py | |
| Generating XML output for class OpenMM::CMAPTorsionForce | |
| Parsing file /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/simtk/unit/__init__.py to /build/source/build/python/simtk/unit/__init__.py | |
| Generating XML output for class OpenMM::CMAPTorsionForce::CMAPTorsionInfo | |
| Generating XML output for class OpenMM::CMMotionRemover | |
| Generating XML output for class OpenMM::CompoundIntegrator | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestAmberInpcrdFile.py to /build/source/build/python/tests/TestAmberInpcrdFile.py | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestAmberPrmtopFile.py to /build/source/build/python/tests/TestAmberPrmtopFile.py | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestBytes.py to /build/source/build/python/tests/TestBytes.py | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestAPIUnits.py to /build/source/build/python/tests/TestAPIUnits.py | |
| Generating XML output for class OpenMM::CustomGBForce::ComputationInfo | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestCharmmFiles.py to /build/source/build/python/tests/TestCharmmFiles.py | |
| Generating XML output for class OpenMM::CustomIntegrator::ComputationInfo | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating XML output for class OpenMM::Context | |
| Parsing file /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating XML output for class OpenMM::Continuous1DFunction | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| Generating XML output for class OpenMM::Continuous2DFunction | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestCheckpointReporter.py to /build/source/build/python/tests/TestCheckpointReporter.py | |
| Parsing file /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| Generating XML output for class OpenMM::Continuous3DFunction | |
| /build/source/openmmapi/include/openmm/TabulatedFunction.h:196: warning: The following parameter of OpenMM::Continuous3DFunction::Continuous3DFunction(int xsize, int ysize, int zsize, const std::vector< double > &values, double xmin, double xmax, double ymin, double ymax, double zmin, double zmax, bool periodic=false) is not documented: | |
| parameter 'zsize' | |
| Generating XML output for class OpenMM::CustomAngleForce | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestDcdFile.py to /build/source/build/python/tests/TestDcdFile.py | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| Generating XML output for class OpenMM::CustomBondForce | |
| Parsing file /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| Generating XML output for class OpenMM::CustomCentroidBondForce | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestElement.py to /build/source/build/python/tests/TestElement.py | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestDesmondDMSFile.py to /build/source/build/python/tests/TestDesmondDMSFile.py | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestGenerators.py to /build/source/build/python/tests/TestGenerators.py | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestForceGroups.py to /build/source/build/python/tests/TestForceGroups.py | |
| Generating XML output for class OpenMM::CustomCompoundBondForce | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestGromacsGroFile.py to /build/source/build/python/tests/TestGromacsGroFile.py | |
| Preprocessing /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestIntegrators.py to /build/source/build/python/tests/TestIntegrators.py | |
| [ 17%] Built target AmoebaApiWrappers | |
| Preprocessing /build/source/openmmapi/include/openmm/Force.h... | |
| Parsing file /build/source/openmmapi/include/openmm/Force.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestGromacsTopFile.py to /build/source/build/python/tests/TestGromacsTopFile.py | |
| Generating XML output for class OpenMM::CustomCVForce | |
| Parsing file /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestMetadynamics.py to /build/source/build/python/tests/TestMetadynamics.py | |
| Preprocessing /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| Generating XML output for class OpenMM::CustomExternalForce | |
| Preprocessing /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestForceField.py to /build/source/build/python/tests/TestForceField.py | |
| Preprocessing /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| [ 17%] CMake-copying file /build/source/wrappers/python/tests/TestModeller.py to /build/source/build/python/tests/TestModeller.py | |
| Preprocessing /build/source/openmmapi/include/openmm/Integrator.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestNumpyCompatibility.py to /build/source/build/python/tests/TestNumpyCompatibility.py | |
| Generating XML output for class OpenMM::CustomGBForce | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestPatches.py to /build/source/build/python/tests/TestPatches.py | |
| Parsing file /build/source/openmmapi/include/openmm/Integrator.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestPdbFile.py to /build/source/build/python/tests/TestPdbFile.py | |
| Preprocessing /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestPdbxFile.py to /build/source/build/python/tests/TestPdbxFile.py | |
| Preprocessing /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Parsing file /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestPickle.py to /build/source/build/python/tests/TestPickle.py | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| Parsing file /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| Generating XML output for class OpenMM::CustomHbondForce | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestSimulatedTempering.py to /build/source/build/python/tests/TestSimulatedTempering.py | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestStateDataReporter.py to /build/source/build/python/tests/TestStateDataReporter.py | |
| Preprocessing /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestSimulation.py to /build/source/build/python/tests/TestSimulation.py | |
| Parsing file /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| Generating XML output for class OpenMM::CustomIntegrator | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestSwigWrappers.py to /build/source/build/python/tests/TestSwigWrappers.py | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestTopology.py to /build/source/build/python/tests/TestTopology.py | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestUnitCell.py to /build/source/build/python/tests/TestUnitCell.py | |
| Preprocessing /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| Parsing file /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestUnits.py to /build/source/build/python/tests/TestUnits.py | |
| Preprocessing /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Parsing file /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/TestVec3.py to /build/source/build/python/tests/TestVec3.py | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/pytest.ini to /build/source/build/python/tests/pytest.ini | |
| Preprocessing /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Generating XML output for class OpenMM::CustomManyParticleForce | |
| Preprocessing /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| Parsing file /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/18protein.rst7 to /build/source/build/python/tests/systems/18protein.rst7 | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/18protein.parm7 to /build/source/build/python/tests/systems/18protein.parm7 | |
| Preprocessing /build/source/openmmapi/include/openmm/State.h... | |
| Parsing file /build/source/openmmapi/include/openmm/State.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/System.h... | |
| Parsing file /build/source/openmmapi/include/openmm/System.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| Parsing file /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| Generating XML output for class OpenMM::CustomNonbondedForce | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/2ci2.pdb.top to /build/source/build/python/tests/systems/2ci2.pdb.top | |
| Preprocessing /build/source/openmmapi/include/openmm/Units.h... | |
| Parsing file /build/source/openmmapi/include/openmm/Units.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/5dhfr_cube.pdb to /build/source/build/python/tests/systems/5dhfr_cube.pdb | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/5dhfr_cube.psf to /build/source/build/python/tests/systems/5dhfr_cube.psf | |
| Preprocessing /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| Parsing file /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/1T2Y.pdb to /build/source/build/python/tests/systems/1T2Y.pdb | |
| [ 19%] CMake-copying file /build/source/wrappers/python/tests/systems/2ci2.pdb.gro to /build/source/build/python/tests/systems/2ci2.pdb.gro | |
| Preprocessing /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf to /build/source/build/python/tests/systems/4TVP-dmj_wat-ion.psf | |
| Parsing file /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/Vec3.h... | |
| Parsing file /build/source/openmmapi/include/openmm/Vec3.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/DNA_mbondi3.inpcrd to /build/source/build/python/tests/systems/DNA_mbondi3.inpcrd | |
| Parsing file /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| Preprocessing /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Parsing file /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Generating XML output for class OpenMM::CustomTorsionForce | |
| Preprocessing /build/source/olla/include/openmm/Platform.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/DNA_mbondi3.prmtop to /build/source/build/python/tests/systems/DNA_mbondi3.prmtop | |
| Parsing file /build/source/olla/include/openmm/Platform.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/Mg_water.inpcrd to /build/source/build/python/tests/systems/Mg_water.inpcrd | |
| Preprocessing /build/source/serialization/include/openmm/serialization/SerializationNode.h... | |
| Generating XML output for class OpenMM::Discrete1DFunction | |
| Parsing file /build/source/serialization/include/openmm/serialization/SerializationNode.h... | |
| Generating XML output for class OpenMM::Discrete2DFunction | |
| Generating XML output for class OpenMM::Discrete3DFunction | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/Mg_water.prmtop to /build/source/build/python/tests/systems/Mg_water.prmtop | |
| Preprocessing /build/source/serialization/include/openmm/serialization/SerializationProxy.h... | |
| Generating XML output for class OpenMM::GayBerneForce::ExceptionInfo | |
| Parsing file /build/source/serialization/include/openmm/serialization/SerializationProxy.h... | |
| Generating XML output for class OpenMM::NonbondedForce::ExceptionInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ExceptionOffsetInfo | |
| Generating XML output for class OpenMM::CustomGBForce::ExclusionInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::ExclusionInfo | |
| Preprocessing /build/source/serialization/include/openmm/serialization/XmlSerializer.h... | |
| Generating XML output for class OpenMM::CustomManyParticleForce::ExclusionInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::ExclusionInfo | |
| Generating XML output for class OpenMM::Force | |
| Parsing file /build/source/serialization/include/openmm/serialization/XmlSerializer.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/MoS2.pdb to /build/source/build/python/tests/systems/MoS2.pdb | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomCVForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomGBForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::FunctionInfo | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| Generating XML output for class OpenMM::CustomIntegrator::FunctionInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::FunctionInfo | |
| Generating XML output for class OpenMM::GayBerneForce | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/MoS2.prm to /build/source/build/python/tests/systems/MoS2.prm | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/MoS2.psf to /build/source/build/python/tests/systems/MoS2.psf | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb to /build/source/build/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| Generating XML output for class OpenMM::GBSAOBCForce | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| Generating XML output for class OpenMM::CustomAngleForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomBondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCVForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomExternalForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomGBForce::GlobalParameterInfo | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/aidilnaaaaa.gro to /build/source/build/python/tests/systems/aidilnaaaaa.gro | |
| Generating XML output for class OpenMM::CustomHbondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomTorsionForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::NonbondedForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::GroupInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::GroupInfo | |
| Generating XML output for class OpenMM::HarmonicAngleForce | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| Generating XML output for class OpenMM::HarmonicBondForce | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/aidilnaaaaa.top to /build/source/build/python/tests/systems/aidilnaaaaa.top | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| Generating XML output for class OpenMM::Integrator | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml to /build/source/build/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| Generating XML output for class OpenMM::CustomNonbondedForce::InteractionGroupInfo | |
| Generating XML output for class OpenMM::LangevinIntegrator | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml to /build/source/build/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml | |
| Generating XML output for class OpenMM::LangevinMiddleIntegrator | |
| Preprocessing /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml to /build/source/build/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml | |
| Generating XML output for class OpenMM::LocalCoordinatesSite | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/source/build/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml | |
| Parsing file /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| Preprocessing /build/source/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... | |
| Generating XML output for class OpenMM::LocalEnergyMinimizer | |
| Parsing file /build/source/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... | |
| Generating XML output for class OpenMM::CMAPTorsionForce::MapInfo | |
| Generating XML output for class OpenMM::MonteCarloAnisotropicBarostat | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml to /build/source/build/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml | |
| Preprocessing /build/source/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... | |
| Parsing file /build/source/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala3_solv.parm7 to /build/source/build/python/tests/systems/ala3_solv.parm7 | |
| [ 21%] CMake-copying file /build/source/wrappers/python/tests/systems/ala3_solv.crd to /build/source/build/python/tests/systems/ala3_solv.crd | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala3_solv.psf to /build/source/build/python/tests/systems/ala3_solv.psf | |
| Generating XML output for class OpenMM::MonteCarloBarostat | |
| Preprocessing /build/source/plugins/drude/openmmapi/include/openmm/DrudeForce.h... | |
| Parsing file /build/source/plugins/drude/openmmapi/include/openmm/DrudeForce.h... | |
| Generating XML output for class OpenMM::MonteCarloFlexibleBarostat | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala3_solv_drude.crd to /build/source/build/python/tests/systems/ala3_solv_drude.crd | |
| Preprocessing /build/source/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... | |
| Parsing file /build/source/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... | |
| Generating XML output for class OpenMM::MonteCarloMembraneBarostat | |
| Preprocessing /build/source/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala3_solv_drude.psf to /build/source/build/python/tests/systems/ala3_solv_drude.psf | |
| Parsing file /build/source/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... | |
| Preprocessing /build/source/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... | |
| Parsing file /build/source/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... | |
| Preprocessing /build/source/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... | |
| Parsing file /build/source/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... | |
| Generating XML output for class OpenMM::NonbondedForce | |
| Preprocessing /build/source/plugins/drude/openmmapi/include/OpenMMDrude.h... | |
| Parsing file /build/source/plugins/drude/openmmapi/include/OpenMMDrude.h... | |
| Building macro definition list... | |
| Building group list... | |
| Building directory list... | |
| Building namespace list... | |
| Building file list... | |
| Building class list... | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala_ala_ala.pdb to /build/source/build/python/tests/systems/ala_ala_ala.pdb | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala_ala_ala.crd to /build/source/build/python/tests/systems/ala_ala_ala.crd | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala_ala_ala.psf to /build/source/build/python/tests/systems/ala_ala_ala.psf | |
| Building concept list... | |
| Computing nesting relations for classes... | |
| Associating documentation with classes... | |
| Associating documentation with concepts... | |
| Building example list... | |
| Searching for enumerations... | |
| Searching for documented typedefs... | |
| Searching for members imported via using declarations... | |
| Searching for included using directives... | |
| Searching for documented variables... | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala_ala_ala.vpsf to /build/source/build/python/tests/systems/ala_ala_ala.vpsf | |
| Generating XML output for class OpenMM::NoseHooverChain | |
| Building interface member list... | |
| Building member list... | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml to /build/source/build/python/tests/systems/alanine-dipeptide-amoeba-forces.xml | |
| Generating XML output for class OpenMM::NoseHooverIntegrator | |
| Generating XML output for class OpenMM::OpenMMException | |
| Generating XML output for class OpenMM::OutOfPlaneSite | |
| Generating XML output for class OpenMM::CustomExternalForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomGBForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::ParticleInfo | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms to /build/source/build/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms | |
| Generating XML output for class OpenMM::GayBerneForce::ParticleInfo | |
| Generating XML output for class OpenMM::GBSAOBCForce::ParticleInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ParticleInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ParticleOffsetInfo | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb to /build/source/build/python/tests/systems/alanine-dipeptide-explicit.pdb | |
| Generating XML output for class OpenMM::CustomExternalForce::ParticleParameterInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::ParticleParameterInfo | |
| Generating XML output for class OpenMM::PeriodicTorsionForce | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop to /build/source/build/python/tests/systems/alanine-dipeptide-explicit.prmtop | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml to /build/source/build/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml | |
| Generating XML output for class OpenMM::PeriodicTorsionForce::PeriodicTorsionInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::PerPairParameterInfo | |
| Generating XML output for class OpenMM::CustomGBForce::PerParticleParameterInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::PerParticleParameterInfo | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala_ala_ala.xpsf to /build/source/build/python/tests/systems/ala_ala_ala.xpsf | |
| Generating XML output for class OpenMM::Platform | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd to /build/source/build/python/tests/systems/alanine-dipeptide-explicit.inpcrd | |
| Generating XML output for class OpenMM::RBTorsionForce | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/ala_ala_ala_drude.pdb to /build/source/build/python/tests/systems/ala_ala_ala_drude.pdb | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml to /build/source/build/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml | |
| Generating XML output for class OpenMM::RBTorsionForce::RBTorsionInfo | |
| Generating XML output for class OpenMM::RMSDForce | |
| Generating XML output for class OpenMM::State | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml to /build/source/build/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml | |
| Generating XML output for class OpenMM::State::StateBuilder | |
| Generating XML output for class OpenMM::System | |
| Generating XML output for class OpenMM::TabulatedFunction | |
| Generating XML output for class OpenMM::ThreeParticleAverageSite | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml to /build/source/build/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml | |
| Generating XML output for class OpenMM::CustomTorsionForce::TorsionInfo | |
| Generating XML output for class OpenMM::CustomTorsionForce::TorsionParameterInfo | |
| Generating XML output for class OpenMM::TwoParticleAverageSite | |
| Searching for friends... | |
| Searching for documented defines... | |
| Computing class inheritance relations... | |
| Generating XML output for class OpenMM::CustomCVForce::VariableInfo | |
| Generating XML output for class OpenMM::VariableLangevinIntegrator | |
| Computing class usage relations... | |
| [ 23%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/source/build/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml | |
| Generating XML output for class OpenMM::VariableVerletIntegrator | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd to /build/source/build/python/tests/systems/alanine-dipeptide-implicit.inpcrd | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb to /build/source/build/python/tests/systems/alanine-dipeptide-implicit.pdb | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop to /build/source/build/python/tests/systems/alanine-dipeptide-implicit.prmtop | |
| Generating XML output for class OpenMM::Vec3 | |
| Generating XML output for class OpenMM::VerletIntegrator | |
| Generating XML output for class OpenMM::VirtualSite | |
| Flushing cached template relations that have become invalid... | |
| Computing class relations... | |
| Generating XML output for namespace OpenMM | |
| Generating XML output for namespace std | |
| Generating XML output for file Platform.h | |
| Add enum values to enums... | |
| Generating XML output for file OpenMM.h | |
| Searching for member function documentation... | |
| Creating members for template instances... | |
| Building page list... | |
| Search for main page... | |
| Computing page relations... | |
| Determining the scope of groups... | |
| Generating XML output for file AndersenThermostat.h | |
| Sorting lists... | |
| Generating XML output for file BrownianIntegrator.h | |
| Generating XML output for file CMAPTorsionForce.h | |
| Generating XML output for file CMMotionRemover.h | |
| Generating XML output for file CompoundIntegrator.h | |
| Generating XML output for file Context.h | |
| Generating XML output for file CustomAngleForce.h | |
| Generating XML output for file CustomBondForce.h | |
| Generating XML output for file CustomCentroidBondForce.h | |
| Generating XML output for file CustomCompoundBondForce.h | |
| Generating XML output for file CustomCVForce.h | |
| Generating XML output for file CustomExternalForce.h | |
| Generating XML output for file CustomGBForce.h | |
| Generating XML output for file CustomHbondForce.h | |
| Generating XML output for file CustomIntegrator.h | |
| Generating XML output for file CustomManyParticleForce.h | |
| Generating XML output for file CustomNonbondedForce.h | |
| Generating XML output for file CustomTorsionForce.h | |
| Generating XML output for file Force.h | |
| Generating XML output for file GayBerneForce.h | |
| Generating XML output for file GBSAOBCForce.h | |
| Generating XML output for file HarmonicAngleForce.h | |
| Generating XML output for file HarmonicBondForce.h | |
| Generating XML output for file Integrator.h | |
| Generating XML output for file LangevinIntegrator.h | |
| Generating XML output for file LangevinMiddleIntegrator.h | |
| Generating XML output for file LocalEnergyMinimizer.h | |
| Generating XML output for file MonteCarloAnisotropicBarostat.h | |
| Generating XML output for file MonteCarloBarostat.h | |
| Generating XML output for file MonteCarloFlexibleBarostat.h | |
| Generating XML output for file MonteCarloMembraneBarostat.h | |
| Generating XML output for file NonbondedForce.h | |
| Generating XML output for file NoseHooverChain.h | |
| Generating XML output for file NoseHooverIntegrator.h | |
| Generating XML output for file OpenMMException.h | |
| Generating XML output for file PeriodicTorsionForce.h | |
| Generating XML output for file RBTorsionForce.h | |
| Generating XML output for file RMSDForce.h | |
| Generating XML output for file State.h | |
| Generating XML output for file System.h | |
| Generating XML output for file TabulatedFunction.h | |
| Determining which enums are documented | |
| Generating XML output for file Units.h | |
| Computing member relations... | |
| Generating XML output for file VariableLangevinIntegrator.h | |
| Generating XML output for file VariableVerletIntegrator.h | |
| Generating XML output for file Vec3.h | |
| Generating XML output for file VerletIntegrator.h | |
| Generating XML output for file VirtualSite.h | |
| Generating XML output for page deprecated | |
| Building full member lists recursively... | |
| Generate XML output for dir /build/source/olla/include/ | |
| Generate XML output for dir /build/source/openmmapi/include/ | |
| Generate XML output for dir /build/source/olla/ | |
| Generate XML output for dir /build/source/olla/include/openmm/ | |
| Generate XML output for dir /build/source/openmmapi/include/openmm/ | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/amber.ncrst to /build/source/build/python/tests/systems/amber.ncrst | |
| Generate XML output for dir /build/source/openmmapi/ | |
| Running plantuml with JAVA... | |
| type lookup cache used 2304/65536 hits=4846 misses=2490 | |
| symbol lookup cache used 2628/65536 hits=19642 misses=2628 | |
| finished... | |
| Adding members to member groups. | |
| Computing member references... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/bcd-nabumetone_lig.dms to /build/source/build/python/tests/systems/bcd-nabumetone_lig.dms | |
| Inheriting documentation... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/altlocs2.pdb to /build/source/build/python/tests/systems/altlocs2.pdb | |
| Generating disk names... | |
| Adding source references... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/amoeba-ion-in-water.pdb to /build/source/build/python/tests/systems/amoeba-ion-in-water.pdb | |
| Adding xrefitems... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms to /build/source/build/python/tests/systems/bcd-nabumetone_rcpt.dms | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/bnz.gro to /build/source/build/python/tests/systems/bnz.gro | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/bnz.top to /build/source/build/python/tests/systems/bnz.top | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/bpti.pdb to /build/source/build/python/tests/systems/bpti.pdb | |
| Sorting member lists... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/charmm-solvated/envi.str to /build/source/build/python/tests/systems/charmm-solvated/envi.str | |
| Setting anonymous enum type... | |
| Computing dependencies between directories... | |
| Generating citations page... | |
| Counting members... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/altlocs.pdb to /build/source/build/python/tests/systems/altlocs.pdb | |
| Counting data structures... | |
| Resolving user defined references... | |
| Finding anchors and sections in the documentation... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf to /build/source/build/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf | |
| [ 25%] Generating OpenMMCWrapper.h, OpenMMCWrapper.cpp, OpenMMFortranModule.f90, OpenMMFortranWrapper.cpp | |
| Transferring function references... | |
| Combining using relations... | |
| Adding members to index pages... | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/charmm-solvated/m14.rtf to /build/source/build/python/tests/systems/charmm-solvated/m14.rtf | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/charmm22.par to /build/source/build/python/tests/systems/charmm22.par | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/charmm22.rtf to /build/source/build/python/tests/systems/charmm22.rtf | |
| [ 25%] CMake-copying file /build/source/wrappers/python/tests/systems/chl1.crd to /build/source/build/python/tests/systems/chl1.crd | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/chl1.psf to /build/source/build/python/tests/systems/chl1.psf | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/charmm-solvated/m14.prm to /build/source/build/python/tests/systems/charmm-solvated/m14.prm | |
| Correcting members for VHDL... | |
| Computing tooltip texts... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/chlb_cgenff.crd to /build/source/build/python/tests/systems/chlb_cgenff.crd | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/chlb_cgenff.psf to /build/source/build/python/tests/systems/chlb_cgenff.psf | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/crds_box.rst7 to /build/source/build/python/tests/systems/crds_box.rst7 | |
| Generating style sheet... | |
| Generating search indices... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/crds_vels.rst7 to /build/source/build/python/tests/systems/crds_vels.rst7 | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/crds_vels_box.rst7 to /build/source/build/python/tests/systems/crds_vels_box.rst7 | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/crdsonly.rst7 to /build/source/build/python/tests/systems/crdsonly.rst7 | |
| Generating example documentation... | |
| Generating file sources... | |
| Generating code for file /build/source/olla/include/openmm/Platform.h... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/cyt-gua-cyt.psf to /build/source/build/python/tests/systems/cyt-gua-cyt.psf | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/explicit.top to /build/source/build/python/tests/systems/explicit.top | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/ff14ipq.parm7 to /build/source/build/python/tests/systems/ff14ipq.parm7 | |
| Generating code for file /build/source/openmmapi/include/OpenMM.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/AndersenThermostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/BrownianIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CMAPTorsionForce.h... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/ff_with_includes.xml to /build/source/build/python/tests/systems/ff_with_includes.xml | |
| Generating code for file /build/source/openmmapi/include/openmm/CMMotionRemover.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CompoundIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/Context.h... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/ff14ipq.rst7 to /build/source/build/python/tests/systems/ff14ipq.rst7 | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomAngleForce.h... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/formaldehyde.pdb to /build/source/build/python/tests/systems/formaldehyde.pdb | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/cyt-gua-cyt.crd to /build/source/build/python/tests/systems/cyt-gua-cyt.crd | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomBondForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomCentroidBondForce.h... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/glycopeptide.pdb to /build/source/build/python/tests/systems/glycopeptide.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomCompoundBondForce.h... | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/gpcr.cif to /build/source/build/python/tests/systems/gpcr.cif | |
| [ 27%] CMake-copying file /build/source/wrappers/python/tests/systems/implicit.top to /build/source/build/python/tests/systems/implicit.top | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomCVForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomExternalForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/improper.psf to /build/source/build/python/tests/systems/improper.psf | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb to /build/source/build/python/tests/systems/impropers_ordering_tetrapeptide.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomGBForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/gaffwat.parm7 to /build/source/build/python/tests/systems/gaffwat.parm7 | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/insertions.pdbx to /build/source/build/python/tests/systems/insertions.pdbx | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomHbondForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomIntegrator.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/ionic.top to /build/source/build/python/tests/systems/ionic.top | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/ionic.gro to /build/source/build/python/tests/systems/ionic.gro | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomManyParticleForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/ions.psf to /build/source/build/python/tests/systems/ions.psf | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/ions.pdb to /build/source/build/python/tests/systems/ions.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomNonbondedForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/lysozyme-implicit-forces.xml to /build/source/build/python/tests/systems/lysozyme-implicit-forces.xml | |
| Generating code for file /build/source/openmmapi/include/openmm/CustomTorsionForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/lysozyme-implicit.pdb to /build/source/build/python/tests/systems/lysozyme-implicit.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/Force.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/GayBerneForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/methanol_ions.pdb to /build/source/build/python/tests/systems/methanol_ions.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/GBSAOBCForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/methanol_ions.psf to /build/source/build/python/tests/systems/methanol_ions.psf | |
| Generating code for file /build/source/openmmapi/include/openmm/HarmonicAngleForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/methanol-box.pdb to /build/source/build/python/tests/systems/methanol-box.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/HarmonicBondForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/Integrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/LangevinIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/LangevinMiddleIntegrator.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/nacl-water.pdb to /build/source/build/python/tests/systems/nacl-water.pdb | |
| Generating code for file /build/source/openmmapi/include/openmm/LocalEnergyMinimizer.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloBarostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/nucleic.pdb to /build/source/build/python/tests/systems/nucleic.pdb | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/par_all22_prot.inp to /build/source/build/python/tests/systems/par_all22_prot.inp | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/par_all22_prot_with_mass.inp to /build/source/build/python/tests/systems/par_all22_prot_with_mass.inp | |
| Generating code for file /build/source/openmmapi/include/openmm/NonbondedForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/par_all36_lipid.prm to /build/source/build/python/tests/systems/par_all36_lipid.prm | |
| Generating code for file /build/source/openmmapi/include/openmm/NoseHooverChain.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/multichain.pdbx to /build/source/build/python/tests/systems/multichain.pdbx | |
| Generating code for file /build/source/openmmapi/include/openmm/NoseHooverIntegrator.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/par_all36_prot.prm to /build/source/build/python/tests/systems/par_all36_prot.prm | |
| Generating code for file /build/source/openmmapi/include/openmm/OpenMMException.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/PeriodicTorsionForce.h... | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/test_amber_ff.xml to /build/source/build/python/tests/systems/test_amber_ff.xml | |
| [ 29%] CMake-copying file /build/source/wrappers/python/tests/systems/par_all36_cgenff.prm to /build/source/build/python/tests/systems/par_all36_cgenff.prm | |
| Generating code for file /build/source/openmmapi/include/openmm/RBTorsionForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/RMSDForce.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/State.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/System.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/TabulatedFunction.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/tip5p.pdb to /build/source/build/python/tests/systems/tip5p.pdb | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/top_all36_cgenff.rtf to /build/source/build/python/tests/systems/top_all36_cgenff.rtf | |
| Generating code for file /build/source/openmmapi/include/openmm/Units.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/toppar_all36_lipid_cholesterol.str to /build/source/build/python/tests/systems/toppar_all36_lipid_cholesterol.str | |
| Generating code for file /build/source/openmmapi/include/openmm/VariableLangevinIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/VariableVerletIntegrator.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/toppar_drude_nucleic_acid_2017b.str to /build/source/build/python/tests/systems/toppar_drude_nucleic_acid_2017b.str | |
| Generating code for file /build/source/openmmapi/include/openmm/Vec3.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/VerletIntegrator.h... | |
| Generating code for file /build/source/openmmapi/include/openmm/VirtualSite.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/toppar_water_ions.str to /build/source/build/python/tests/systems/toppar_water_ions.str | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/triclinic.pdbx to /build/source/build/python/tests/systems/triclinic.pdbx | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/triclinic.gro to /build/source/build/python/tests/systems/triclinic.gro | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/triclinic.pdb to /build/source/build/python/tests/systems/triclinic.pdb | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str to /build/source/build/python/tests/systems/toppar_drude_master_protein_2013e.str | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/tz2.truncoct.parm7 to /build/source/build/python/tests/systems/tz2.truncoct.parm7 | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/tz2.truncoct.rst7 to /build/source/build/python/tests/systems/tz2.truncoct.rst7 | |
| Generating code for file /build/source/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... | |
| Generating code for file /build/source/plugins/drude/openmmapi/include/openmm/DrudeForce.h... | |
| Generating code for file /build/source/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... | |
| Generating code for file /build/source/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/water_methanol.prm to /build/source/build/python/tests/systems/water_methanol.prm | |
| Generating code for file /build/source/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... | |
| Generating code for file /build/source/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... | |
| Generating code for file /build/source/plugins/drude/openmmapi/include/OpenMMDrude.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/water-box-216.prmtop to /build/source/build/python/tests/systems/water-box-216.prmtop | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/systems/water_methanol.psf to /build/source/build/python/tests/systems/water_methanol.psf | |
| Generating code for file /build/source/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/validateConstraints.py to /build/source/build/python/tests/validateConstraints.py | |
| Generating code for file /build/source/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... | |
| Generating code for file /build/source/serialization/include/openmm/serialization/SerializationNode.h... | |
| Generating code for file /build/source/serialization/include/openmm/serialization/SerializationProxy.h... | |
| [ 31%] CMake-copying file /build/source/wrappers/python/tests/validateModeller.py to /build/source/build/python/tests/validateModeller.py | |
| Generating code for file /build/source/serialization/include/openmm/serialization/XmlSerializer.h... | |
| Generating file documentation... | |
| Generating docs for file /build/source/openmmapi/include/openmm/Units.h... | |
| Generating page documentation... | |
| Generating docs for page deprecated... | |
| Generating group documentation... | |
| Generating class documentation... | |
| Generating concept documentation... | |
| Generating namespace index... | |
| Generating docs for compound OpenMM::AmoebaGeneralizedKirkwoodForce... | |
| Generating docs for compound OpenMM::AmoebaMultipoleForce... | |
| Generating docs for compound OpenMM::AmoebaTorsionTorsionForce... | |
| Generating docs for compound OpenMM::AmoebaVdwForce... | |
| Generating docs for compound OpenMM::AmoebaWcaDispersionForce... | |
| Generating docs for compound OpenMM::AndersenThermostat... | |
| Generating docs for compound OpenMM::BrownianIntegrator... | |
| Generating docs for compound OpenMM::CMAPTorsionForce... | |
| Generating docs for compound OpenMM::CMMotionRemover... | |
| Generating docs for compound OpenMM::CompoundIntegrator... | |
| Generating docs for compound OpenMM::Context... | |
| Generating docs for compound OpenMM::Continuous1DFunction... | |
| Generating docs for compound OpenMM::Continuous2DFunction... | |
| Generating docs for compound OpenMM::Continuous3DFunction... | |
| /build/source/openmmapi/include/openmm/TabulatedFunction.h:196: warning: The following parameter of OpenMM::Continuous3DFunction::Continuous3DFunction(int xsize, int ysize, int zsize, const std::vector< double > &values, double xmin, double xmax, double ymin, double ymax, double zmin, double zmax, bool periodic=false) is not documented: | |
| parameter 'zsize' | |
| Generating docs for compound OpenMM::CustomAngleForce... | |
| Generating docs for compound OpenMM::CustomBondForce... | |
| Generating docs for compound OpenMM::CustomCentroidBondForce... | |
| Generating docs for compound OpenMM::CustomCompoundBondForce... | |
| Generating docs for compound OpenMM::CustomCVForce... | |
| Generating docs for compound OpenMM::CustomExternalForce... | |
| Generating docs for compound OpenMM::CustomGBForce... | |
| Generating docs for compound OpenMM::CustomHbondForce... | |
| Generating docs for compound OpenMM::CustomIntegrator... | |
| Generating docs for compound OpenMM::CustomManyParticleForce... | |
| Generating docs for compound OpenMM::CustomNonbondedForce... | |
| Generating docs for compound OpenMM::CustomTorsionForce... | |
| Generating docs for compound OpenMM::Discrete1DFunction... | |
| Generating docs for compound OpenMM::Discrete2DFunction... | |
| Generating docs for compound OpenMM::Discrete3DFunction... | |
| Generating docs for compound OpenMM::DrudeForce... | |
| Generating docs for compound OpenMM::DrudeIntegrator... | |
| Generating docs for compound OpenMM::DrudeLangevinIntegrator... | |
| Generating docs for compound OpenMM::DrudeNoseHooverIntegrator... | |
| Generating docs for compound OpenMM::DrudeSCFIntegrator... | |
| Generating docs for compound OpenMM::Force... | |
| Generating docs for compound OpenMM::GayBerneForce... | |
| Generating docs for compound OpenMM::GBSAOBCForce... | |
| Generating docs for compound OpenMM::HarmonicAngleForce... | |
| Generating docs for compound OpenMM::HarmonicBondForce... | |
| Generating docs for compound OpenMM::HippoNonbondedForce... | |
| Generating docs for compound OpenMM::Integrator... | |
| Generating docs for compound OpenMM::LangevinIntegrator... | |
| Generating docs for compound OpenMM::LangevinMiddleIntegrator... | |
| Generating docs for compound OpenMM::LocalCoordinatesSite... | |
| Generating docs for compound OpenMM::LocalEnergyMinimizer... | |
| Generating docs for compound OpenMM::MonteCarloAnisotropicBarostat... | |
| Generating docs for compound OpenMM::MonteCarloBarostat... | |
| Generating docs for compound OpenMM::MonteCarloFlexibleBarostat... | |
| Generating docs for compound OpenMM::MonteCarloMembraneBarostat... | |
| Generating docs for compound OpenMM::NonbondedForce... | |
| Generating docs for compound OpenMM::NoseHooverChain... | |
| Generating docs for compound OpenMM::NoseHooverIntegrator... | |
| Generating docs for compound OpenMM::OpenMMException... | |
| Generating docs for compound OpenMM::OutOfPlaneSite... | |
| Generating docs for compound OpenMM::PeriodicTorsionForce... | |
| Generating docs for compound OpenMM::Platform... | |
| Generating docs for compound OpenMM::RBTorsionForce... | |
| Generating docs for compound OpenMM::RMSDForce... | |
| Generating docs for compound OpenMM::RPMDIntegrator... | |
| Generating docs for compound OpenMM::RPMDMonteCarloBarostat... | |
| Generating docs for compound OpenMM::SerializationNode... | |
| /build/source/serialization/include/openmm/serialization/SerializationNode.h:95: warning: The following parameter of OpenMM::SerializationNode::getChildNode(const std::string &name) is not documented: | |
| parameter 'name' | |
| /build/source/serialization/include/openmm/serialization/SerializationNode.h:88: warning: The following parameter of OpenMM::SerializationNode::getChildNode(const std::string &name) const is not documented: | |
| parameter 'name' | |
| Generating docs for compound OpenMM::SerializationProxy... | |
| Generating docs for compound OpenMM::State... | |
| Generating docs for compound OpenMM::System... | |
| Generating docs for compound OpenMM::TabulatedFunction... | |
| Generating docs for compound OpenMM::ThreeParticleAverageSite... | |
| Generating docs for compound OpenMM::TwoParticleAverageSite... | |
| Generating docs for compound OpenMM::VariableLangevinIntegrator... | |
| Generating docs for compound OpenMM::VariableVerletIntegrator... | |
| Generating docs for compound OpenMM::Vec3... | |
| Generating docs for compound OpenMM::VerletIntegrator... | |
| Generating docs for compound OpenMM::VirtualSite... | |
| Generating docs for compound OpenMM::XmlSerializer... | |
| Generating graph info page... | |
| Generating directory documentation... | |
| Generating index page... | |
| Generating page index... | |
| Generating module index... | |
| Generating namespace index... | |
| Generating namespace member index... | |
| Generating concept index... | |
| Generating annotated compound index... | |
| Generating alphabetical compound index... | |
| Generating hierarchical class index... | |
| Generating member index... | |
| Generating file index... | |
| Generating file member index... | |
| Generating example index... | |
| finalizing index lists... | |
| writing tag file... | |
| Generating XML output... | |
| Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce | |
| Generating XML output for class OpenMM::AmoebaMultipoleForce | |
| Generating XML output for class OpenMM::AmoebaTorsionTorsionForce | |
| Generating XML output for class OpenMM::AmoebaVdwForce | |
| Generating XML output for class OpenMM::AmoebaWcaDispersionForce | |
| Generating XML output for class OpenMM::AndersenThermostat | |
| Generating XML output for class OpenMM::CustomAngleForce::AngleInfo | |
| Generating XML output for class OpenMM::HarmonicAngleForce::AngleInfo | |
| Generating XML output for class OpenMM::CustomAngleForce::AngleParameterInfo | |
| Generating XML output for class OpenMM::CustomBondForce::BondInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::BondInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::BondInfo | |
| Generating XML output for class OpenMM::HarmonicBondForce::BondInfo | |
| Generating XML output for class OpenMM::CustomBondForce::BondParameterInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::BondParameterInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::BondParameterInfo | |
| Generating XML output for class OpenMM::BrownianIntegrator | |
| Generating XML output for class OpenMM::CMAPTorsionForce | |
| Generating XML output for class OpenMM::CMAPTorsionForce::CMAPTorsionInfo | |
| Generating XML output for class OpenMM::CMMotionRemover | |
| Generating XML output for class OpenMM::CompoundIntegrator | |
| Generating XML output for class OpenMM::CustomGBForce::ComputationInfo | |
| Generating XML output for class OpenMM::CustomIntegrator::ComputationInfo | |
| Generating XML output for class OpenMM::Context | |
| Generating XML output for class OpenMM::Continuous1DFunction | |
| Generating XML output for class OpenMM::Continuous2DFunction | |
| Generating XML output for class OpenMM::Continuous3DFunction | |
| /build/source/openmmapi/include/openmm/TabulatedFunction.h:196: warning: The following parameter of OpenMM::Continuous3DFunction::Continuous3DFunction(int xsize, int ysize, int zsize, const std::vector< double > &values, double xmin, double xmax, double ymin, double ymax, double zmin, double zmax, bool periodic=false) is not documented: | |
| parameter 'zsize' | |
| Generating XML output for class OpenMM::CustomAngleForce | |
| Generating XML output for class OpenMM::CustomBondForce | |
| Generating XML output for class OpenMM::CustomCentroidBondForce | |
| Generating XML output for class OpenMM::CustomCompoundBondForce | |
| Generating XML output for class OpenMM::CustomCVForce | |
| Generating XML output for class OpenMM::CustomExternalForce | |
| Generating XML output for class OpenMM::CustomGBForce | |
| Generating XML output for class OpenMM::CustomHbondForce | |
| Generating XML output for class OpenMM::CustomIntegrator | |
| Generating XML output for class OpenMM::CustomManyParticleForce | |
| Generating XML output for class OpenMM::CustomNonbondedForce | |
| Generating XML output for class OpenMM::CustomTorsionForce | |
| Generating XML output for class OpenMM::Discrete1DFunction | |
| Generating XML output for class OpenMM::Discrete2DFunction | |
| Generating XML output for class OpenMM::Discrete3DFunction | |
| Generating XML output for class OpenMM::DrudeForce | |
| Generating XML output for class OpenMM::DrudeIntegrator | |
| Generating XML output for class OpenMM::DrudeLangevinIntegrator | |
| Generating XML output for class OpenMM::DrudeNoseHooverIntegrator | |
| Generating XML output for class OpenMM::DrudeSCFIntegrator | |
| Generating XML output for class OpenMM::GayBerneForce::ExceptionInfo | |
| Generating XML output for class OpenMM::HippoNonbondedForce::ExceptionInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ExceptionInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ExceptionOffsetInfo | |
| Generating XML output for class OpenMM::CustomGBForce::ExclusionInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::ExclusionInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::ExclusionInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::ExclusionInfo | |
| Generating XML output for class OpenMM::Force | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomCVForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomGBForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomIntegrator::FunctionInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::FunctionInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::FunctionInfo | |
| Generating XML output for class OpenMM::GayBerneForce | |
| Generating XML output for class OpenMM::GBSAOBCForce | |
| Generating XML output for class OpenMM::CustomAngleForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomBondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCompoundBondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCVForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomExternalForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomGBForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomTorsionForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::NonbondedForce::GlobalParameterInfo | |
| Generating XML output for class OpenMM::CustomCentroidBondForce::GroupInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::GroupInfo | |
| Generating XML output for class OpenMM::HarmonicAngleForce | |
| Generating XML output for class OpenMM::HarmonicBondForce | |
| Generating XML output for class OpenMM::HippoNonbondedForce | |
| Generating XML output for class OpenMM::Integrator | |
| Generating XML output for class OpenMM::CustomNonbondedForce::InteractionGroupInfo | |
| Generating XML output for class OpenMM::LangevinIntegrator | |
| Generating XML output for class OpenMM::LangevinMiddleIntegrator | |
| Generating XML output for class OpenMM::LocalCoordinatesSite | |
| Generating XML output for class OpenMM::LocalEnergyMinimizer | |
| Generating XML output for class OpenMM::CMAPTorsionForce::MapInfo | |
| Generating XML output for class OpenMM::MonteCarloAnisotropicBarostat | |
| Generating XML output for class OpenMM::MonteCarloBarostat | |
| Generating XML output for class OpenMM::MonteCarloFlexibleBarostat | |
| Generating XML output for class OpenMM::MonteCarloMembraneBarostat | |
| Generating XML output for class OpenMM::AmoebaMultipoleForce::MultipoleInfo | |
| Generating XML output for class OpenMM::NonbondedForce | |
| Generating XML output for class OpenMM::NoseHooverChain | |
| Generating XML output for class OpenMM::NoseHooverIntegrator | |
| Generating XML output for class OpenMM::OpenMMException | |
| Generating XML output for class OpenMM::OutOfPlaneSite | |
| Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomExternalForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomGBForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::ParticleInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::ParticleInfo | |
| Generating XML output for class OpenMM::DrudeForce::ParticleInfo | |
| Generating XML output for class OpenMM::GayBerneForce::ParticleInfo | |
| Generating XML output for class OpenMM::GBSAOBCForce::ParticleInfo | |
| Generating XML output for class OpenMM::HippoNonbondedForce::ParticleInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ParticleInfo | |
| Generating XML output for class OpenMM::NonbondedForce::ParticleOffsetInfo | |
| Generating XML output for class OpenMM::CustomExternalForce::ParticleParameterInfo | |
| Generating XML output for class OpenMM::CustomManyParticleForce::ParticleParameterInfo | |
| Generating XML output for class OpenMM::AmoebaVdwForce::ParticleTypeInfo | |
| Generating XML output for class OpenMM::PeriodicTorsionForce | |
| Generating XML output for class OpenMM::PeriodicTorsionForce::PeriodicTorsionInfo | |
| Generating XML output for class OpenMM::CustomHbondForce::PerPairParameterInfo | |
| Generating XML output for class OpenMM::CustomGBForce::PerParticleParameterInfo | |
| Generating XML output for class OpenMM::CustomNonbondedForce::PerParticleParameterInfo | |
| Generating XML output for class OpenMM::Platform | |
| Generating XML output for class OpenMM::RBTorsionForce | |
| Generating XML output for class OpenMM::RBTorsionForce::RBTorsionInfo | |
| Generating XML output for class OpenMM::RMSDForce | |
| Generating XML output for class OpenMM::RPMDIntegrator | |
| Generating XML output for class OpenMM::RPMDMonteCarloBarostat | |
| Generating XML output for class OpenMM::DrudeForce::ScreenedPairInfo | |
| Generating XML output for class OpenMM::SerializationNode | |
| /build/source/serialization/include/openmm/serialization/SerializationNode.h:88: warning: The following parameter of OpenMM::SerializationNode::getChildNode(const std::string &name) const is not documented: | |
| parameter 'name' | |
| /build/source/serialization/include/openmm/serialization/SerializationNode.h:95: warning: The following parameter of OpenMM::SerializationNode::getChildNode(const std::string &name) is not documented: | |
| parameter 'name' | |
| Generating XML output for class OpenMM::SerializationProxy | |
| Generating XML output for class OpenMM::State | |
| Generating XML output for class OpenMM::State::StateBuilder | |
| Generating XML output for class OpenMM::System | |
| Generating XML output for class OpenMM::TabulatedFunction | |
| Generating XML output for class OpenMM::ThreeParticleAverageSite | |
| Generating XML output for class OpenMM::CustomTorsionForce::TorsionInfo | |
| Generating XML output for class OpenMM::CustomTorsionForce::TorsionParameterInfo | |
| Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionGridInfo | |
| Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionInfo | |
| Generating XML output for class OpenMM::TwoParticleAverageSite | |
| Generating XML output for class OpenMM::AmoebaVdwForce::TypePairInfo | |
| Generating XML output for class OpenMM::CustomCVForce::VariableInfo | |
| Generating XML output for class OpenMM::VariableLangevinIntegrator | |
| Generating XML output for class OpenMM::VariableVerletIntegrator | |
| Generating XML output for class OpenMM::AmoebaVdwForce::VdwInfo | |
| Generating XML output for class OpenMM::Vec3 | |
| Generating XML output for class OpenMM::VerletIntegrator | |
| Generating XML output for class OpenMM::VirtualSite | |
| Generating XML output for class OpenMM::AmoebaWcaDispersionForce::WcaDispersionInfo | |
| Generating XML output for class OpenMM::XmlSerializer | |
| Generating XML output for namespace OpenMM | |
| Generating XML output for namespace std | |
| Generating XML output for file Platform.h | |
| Generating XML output for file OpenMM.h | |
| Generating XML output for file AndersenThermostat.h | |
| Generating XML output for file BrownianIntegrator.h | |
| Generating XML output for file CMAPTorsionForce.h | |
| Generating XML output for file CMMotionRemover.h | |
| Generating XML output for file CompoundIntegrator.h | |
| Generating XML output for file Context.h | |
| Generating XML output for file CustomAngleForce.h | |
| Generating XML output for file CustomBondForce.h | |
| Generating XML output for file CustomCentroidBondForce.h | |
| Generating XML output for file CustomCompoundBondForce.h | |
| Generating XML output for file CustomCVForce.h | |
| Generating XML output for file CustomExternalForce.h | |
| Generating XML output for file CustomGBForce.h | |
| Generating XML output for file CustomHbondForce.h | |
| Generating XML output for file CustomIntegrator.h | |
| Generating XML output for file CustomManyParticleForce.h | |
| Generating XML output for file CustomNonbondedForce.h | |
| Generating XML output for file CustomTorsionForce.h | |
| Generating XML output for file Force.h | |
| Generating XML output for file GayBerneForce.h | |
| Generating XML output for file GBSAOBCForce.h | |
| Generating XML output for file HarmonicAngleForce.h | |
| Generating XML output for file HarmonicBondForce.h | |
| Generating XML output for file Integrator.h | |
| Generating XML output for file LangevinIntegrator.h | |
| Generating XML output for file LangevinMiddleIntegrator.h | |
| Generating XML output for file LocalEnergyMinimizer.h | |
| Generating XML output for file MonteCarloAnisotropicBarostat.h | |
| Generating XML output for file MonteCarloBarostat.h | |
| Generating XML output for file MonteCarloFlexibleBarostat.h | |
| Generating XML output for file MonteCarloMembraneBarostat.h | |
| Generating XML output for file NonbondedForce.h | |
| Generating XML output for file NoseHooverChain.h | |
| Generating XML output for file NoseHooverIntegrator.h | |
| Generating XML output for file OpenMMException.h | |
| Generating XML output for file PeriodicTorsionForce.h | |
| Generating XML output for file RBTorsionForce.h | |
| Generating XML output for file RMSDForce.h | |
| Generating XML output for file State.h | |
| Generating XML output for file System.h | |
| Generating XML output for file TabulatedFunction.h | |
| Generating XML output for file Units.h | |
| Generating XML output for file VariableLangevinIntegrator.h | |
| Generating XML output for file VariableVerletIntegrator.h | |
| Generating XML output for file Vec3.h | |
| Generating XML output for file VerletIntegrator.h | |
| Generating XML output for file VirtualSite.h | |
| Generating XML output for file AmoebaGeneralizedKirkwoodForce.h | |
| Generating XML output for file AmoebaMultipoleForce.h | |
| Generating XML output for file AmoebaTorsionTorsionForce.h | |
| Generating XML output for file AmoebaVdwForce.h | |
| Generating XML output for file AmoebaWcaDispersionForce.h | |
| Generating XML output for file HippoNonbondedForce.h | |
| Generating XML output for file OpenMMAmoeba.h | |
| Generating XML output for file DrudeForce.h | |
| Generating XML output for file DrudeIntegrator.h | |
| Generating XML output for file DrudeLangevinIntegrator.h | |
| Generating XML output for file DrudeNoseHooverIntegrator.h | |
| Generating XML output for file DrudeSCFIntegrator.h | |
| Generating XML output for file OpenMMDrude.h | |
| Generating XML output for file RPMDIntegrator.h | |
| Generating XML output for file RPMDMonteCarloBarostat.h | |
| Generating XML output for file SerializationNode.h | |
| Generating XML output for file SerializationProxy.h | |
| Generating XML output for file XmlSerializer.h | |
| Generating XML output for page deprecated | |
| Generate XML output for dir /build/source/plugins/amoeba/ | |
| Generate XML output for dir /build/source/plugins/drude/ | |
| Generate XML output for dir /build/source/olla/include/ | |
| Generate XML output for dir /build/source/openmmapi/include/ | |
| Generate XML output for dir /build/source/plugins/amoeba/openmmapi/include/ | |
| Generate XML output for dir /build/source/plugins/drude/openmmapi/include/ | |
| Generate XML output for dir /build/source/plugins/rpmd/openmmapi/include/ | |
| Generate XML output for dir /build/source/serialization/include/ | |
| Generate XML output for dir /build/source/olla/ | |
| Generate XML output for dir /build/source/olla/include/openmm/ | |
| Generate XML output for dir /build/source/openmmapi/include/openmm/ | |
| Generate XML output for dir /build/source/plugins/amoeba/openmmapi/include/openmm/ | |
| Generate XML output for dir /build/source/plugins/drude/openmmapi/include/openmm/ | |
| Generate XML output for dir /build/source/plugins/rpmd/openmmapi/include/openmm/ | |
| Generate XML output for dir /build/source/serialization/include/openmm/ | |
| Generate XML output for dir /build/source/openmmapi/ | |
| Generate XML output for dir /build/source/plugins/amoeba/openmmapi/ | |
| Generate XML output for dir /build/source/plugins/drude/openmmapi/ | |
| Generate XML output for dir /build/source/plugins/rpmd/openmmapi/ | |
| Generate XML output for dir /build/source/plugins/ | |
| Generate XML output for dir /build/source/plugins/rpmd/ | |
| Generate XML output for dir /build/source/serialization/ | |
| Generate XML output for dir /build/source/serialization/include/openmm/serialization/ | |
| Running plantuml with JAVA... | |
| type lookup cache used 3036/65536 hits=6636 misses=3263 | |
| symbol lookup cache used 3473/65536 hits=27529 misses=3473 | |
| finished... | |
| [ 31%] Creating OpenMM Python swig input files... | |
| [ 31%] Built target ApiWrappers | |
| [ 31%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o | |
| [ 31%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o | |
| [ 31%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o | |
| [ 31%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o | |
| [ 33%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o | |
| Integrator.getStepSize() returns unit.picosecond | |
| VariableVerletIntegrator.getMaximumStepSize() returns unit.picosecond | |
| VariableLangevinIntegrator.getTemperature() returns unit.kelvin | |
| VariableLangevinIntegrator.getFriction() returns unit.picosecond**-1 | |
| VariableLangevinIntegrator.getMaximumStepSize() returns unit.picosecond | |
| System.getParticleMass() returns unit.amu | |
| System.getConstraintParameters() returns particle1 as None | |
| System.getConstraintParameters() returns particle2 as None | |
| System.getConstraintParameters() returns distance as unit.nanometer | |
| System.getDefaultPeriodicBoxVectors() returns a as unit.nanometer | |
| System.getDefaultPeriodicBoxVectors() returns b as unit.nanometer | |
| System.getDefaultPeriodicBoxVectors() returns c as unit.nanometer | |
| State.getTime() returns unit.picosecond | |
| State.getKineticEnergy() returns unit.kilojoules_per_mole | |
| State.getPotentialEnergy() returns unit.kilojoules_per_mole | |
| State.getPeriodicBoxVectors() returns unit.nanometers | |
| State.getPeriodicBoxVolume() returns unit.nanometers**3 | |
| RPMDMonteCarloBarostat.getDefaultPressure() returns unit.bar | |
| RPMDIntegrator.getTemperature() returns unit.kelvin | |
| RPMDIntegrator.getFriction() returns unit.picosecond**-1 | |
| RPMDIntegrator.getTotalEnergy() returns unit.kilojoules_per_mole | |
| RMSDForce.getReferencePositions() returns unit.nanometer | |
| RBTorsionForce.getTorsionParameters() returns particle1 as None | |
| RBTorsionForce.getTorsionParameters() returns particle2 as None | |
| RBTorsionForce.getTorsionParameters() returns particle3 as None | |
| RBTorsionForce.getTorsionParameters() returns particle4 as None | |
| RBTorsionForce.getTorsionParameters() returns c0 as unit.kilojoules_per_mole | |
| RBTorsionForce.getTorsionParameters() returns c1 as unit.kilojoules_per_mole | |
| RBTorsionForce.getTorsionParameters() returns c2 as unit.kilojoules_per_mole | |
| RBTorsionForce.getTorsionParameters() returns c3 as unit.kilojoules_per_mole | |
| RBTorsionForce.getTorsionParameters() returns c4 as unit.kilojoules_per_mole | |
| RBTorsionForce.getTorsionParameters() returns c5 as unit.kilojoules_per_mole | |
| PeriodicTorsionForce.getTorsionParameters() returns particle1 as None | |
| PeriodicTorsionForce.getTorsionParameters() returns particle2 as None | |
| PeriodicTorsionForce.getTorsionParameters() returns particle3 as None | |
| PeriodicTorsionForce.getTorsionParameters() returns particle4 as None | |
| PeriodicTorsionForce.getTorsionParameters() returns periodicity as None | |
| PeriodicTorsionForce.getTorsionParameters() returns phase as unit.radian | |
| PeriodicTorsionForce.getTorsionParameters() returns k as unit.kilojoule_per_mole | |
| NoseHooverIntegrator.getTemperature() returns unit.kelvin | |
| NoseHooverIntegrator.getRelativeTemperature() returns unit.kelvin | |
| NoseHooverIntegrator.getCollisionFrequency() returns unit.picosecond**-1 | |
| NoseHooverIntegrator.getRelativeCollisionFrequency() returns unit.picosecond**-1 | |
| NoseHooverIntegrator.computeHeatBathEnergy() returns unit.kilojoules_per_mole | |
| NoseHooverIntegrator.getMaximumPairDistance() returns unit.nanometer | |
| NoseHooverChain.getTemperature() returns unit.kelvin | |
| NoseHooverChain.getRelativeTemperature() returns unit.kelvin | |
| NoseHooverChain.getCollisionFrequency() returns unit.picosecond**-1 | |
| NoseHooverChain.getRelativeCollisionFrequency() returns unit.picosecond**-1 | |
| NonbondedForce.getCutoffDistance() returns unit.nanometers | |
| NonbondedForce.getSwitchingDistance() returns unit.nanometers | |
| NonbondedForce.getPMEParameters() returns alpha as unit.nanometer**-1 | |
| NonbondedForce.getPMEParameters() returns nx as None | |
| NonbondedForce.getPMEParameters() returns ny as None | |
| NonbondedForce.getPMEParameters() returns nz as None | |
| NonbondedForce.getParticleParameters() returns charge as unit.elementary_charge | |
| NonbondedForce.getParticleParameters() returns sigma as unit.nanometer | |
| NonbondedForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole | |
| NonbondedForce.getExceptionParameters() returns particle1 as None | |
| NonbondedForce.getExceptionParameters() returns particle2 as None | |
| NonbondedForce.getExceptionParameters() returns chargeProd as unit.elementary_charge*unit.elementary_charge | |
| NonbondedForce.getExceptionParameters() returns sigma as unit.nanometer | |
| NonbondedForce.getExceptionParameters() returns epsilon as unit.kilojoule_per_mole | |
| MonteCarloMembraneBarostat.getDefaultPressure() returns unit.bar | |
| MonteCarloMembraneBarostat.getDefaultSurfaceTension() returns unit.bar*unit.nanometer | |
| MonteCarloMembraneBarostat.getDefaultTemperature() returns unit.kelvin | |
| MonteCarloFlexibleBarostat.getDefaultPressure() returns unit.bar | |
| MonteCarloFlexibleBarostat.getDefaultTemperature() returns unit.kelvin | |
| MonteCarloBarostat.getDefaultPressure() returns unit.bar | |
| MonteCarloBarostat.getDefaultTemperature() returns unit.kelvin | |
| MonteCarloAnisotropicBarostat.getDefaultPressure() returns unit.bar | |
| MonteCarloAnisotropicBarostat.getDefaultTemperature() returns unit.kelvin | |
| LocalCoordinatesSite.getLocalPosition() returns unit.nanometer | |
| LangevinMiddleIntegrator.getTemperature() returns unit.kelvin | |
| LangevinMiddleIntegrator.getFriction() returns unit.picosecond**-1 | |
| LangevinIntegrator.getTemperature() returns unit.kelvin | |
| LangevinIntegrator.getFriction() returns unit.picosecond**-1 | |
| HippoNonbondedForce.getCutoffDistance() returns unit.nanometers | |
| HippoNonbondedForce.getSwitchingDistance() returns unit.nanometers | |
| HippoNonbondedForce.getParticleParameters() returns charge as unit.elementary_charge | |
| HippoNonbondedForce.getParticleParameters() returns dipole as unit.elementary_charge*unit.nanometer | |
| HippoNonbondedForce.getParticleParameters() returns quadrupole as unit.elementary_charge*unit.nanometer**2 | |
| HippoNonbondedForce.getParticleParameters() returns coreCharge as unit.elementary_charge | |
| HippoNonbondedForce.getParticleParameters() returns alpha as None | |
| HippoNonbondedForce.getParticleParameters() returns epsilon as None | |
| HippoNonbondedForce.getParticleParameters() returns damping as None | |
| HippoNonbondedForce.getParticleParameters() returns c6 as None | |
| HippoNonbondedForce.getParticleParameters() returns pauliK as None | |
| HippoNonbondedForce.getParticleParameters() returns pauliQ as None | |
| HippoNonbondedForce.getParticleParameters() returns pauliAlpha as None | |
| HippoNonbondedForce.getParticleParameters() returns polarizability as None | |
| HippoNonbondedForce.getParticleParameters() returns axisType as None | |
| HippoNonbondedForce.getParticleParameters() returns multipoleAtomZ as None | |
| HippoNonbondedForce.getParticleParameters() returns multipoleAtomX as None | |
| HippoNonbondedForce.getParticleParameters() returns multipoleAtomY as None | |
| HarmonicBondForce.getBondParameters() returns particle1 as None | |
| HarmonicBondForce.getBondParameters() returns particle2 as None | |
| HarmonicBondForce.getBondParameters() returns length as unit.nanometer | |
| HarmonicBondForce.getBondParameters() returns k as unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) | |
| HarmonicAngleForce.getAngleParameters() returns particle1 as None | |
| HarmonicAngleForce.getAngleParameters() returns particle2 as None | |
| HarmonicAngleForce.getAngleParameters() returns particle3 as None | |
| HarmonicAngleForce.getAngleParameters() returns angle as unit.radian | |
| HarmonicAngleForce.getAngleParameters() returns k as unit.kilojoule_per_mole/(unit.radian*unit.radian) | |
| GBSAOBCForce.getParticleParameters() returns charge as unit.elementary_charge | |
| GBSAOBCForce.getParticleParameters() returns radius as unit.nanometer | |
| GBSAOBCForce.getParticleParameters() returns scalingFactor as None | |
| GBSAOBCForce.getSurfaceAreaEnergy() returns unit.kilojoule_per_mole/unit.nanometer/unit.nanometer | |
| GBSAOBCForce.getCutoffDistance() returns unit.nanometers | |
| GayBerneForce.getCutoffDistance() returns unit.nanometers | |
| GayBerneForce.getSwitchingDistance() returns unit.nanometers | |
| GayBerneForce.getParticleParameters() returns sigma as unit.nanometer | |
| GayBerneForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole | |
| GayBerneForce.getParticleParameters() returns xparticle as None | |
| GayBerneForce.getParticleParameters() returns yparticle as None | |
| GayBerneForce.getParticleParameters() returns sx as unit.nanometer | |
| GayBerneForce.getParticleParameters() returns sy as unit.nanometer | |
| GayBerneForce.getParticleParameters() returns sz as unit.nanometer | |
| GayBerneForce.getParticleParameters() returns ex as None | |
| GayBerneForce.getParticleParameters() returns ey as None | |
| GayBerneForce.getParticleParameters() returns ez as None | |
| DrudeIntegrator.getDrudeTemperature() returns unit.kelvin | |
| DrudeIntegrator.getMaxDrudeDistance() returns unit.nanometer | |
| DrudeSCFIntegrator.getMinimizationErrorTolerance() returns unit.kilojoules_per_mole/unit.nanometer | |
| DrudeNoseHooverIntegrator.getMaxDrudeDistance() returns unit.nanometer | |
| DrudeNoseHooverIntegrator.getVelocitiesForTemperature() returns unit.nanometers / unit.picosecond | |
| DrudeLangevinIntegrator.getTemperature() returns unit.kelvin | |
| DrudeLangevinIntegrator.getFriction() returns unit.picosecond**-1 | |
| DrudeLangevinIntegrator.getDrudeFriction() returns unit.picosecond**-1 | |
| DrudeForce.getParticleParameters() returns particle as None | |
| DrudeForce.getParticleParameters() returns particle1 as None | |
| DrudeForce.getParticleParameters() returns particle2 as None | |
| DrudeForce.getParticleParameters() returns particle3 as None | |
| DrudeForce.getParticleParameters() returns particle4 as None | |
| DrudeForce.getParticleParameters() returns charge as unit.elementary_charge | |
| DrudeForce.getParticleParameters() returns polarizability as unit.nanometer**3 | |
| DrudeForce.getParticleParameters() returns aniso12 as None | |
| DrudeForce.getParticleParameters() returns aniso34 as None | |
| CustomNonbondedForce.getCutoffDistance() returns unit.nanometers | |
| CustomNonbondedForce.getSwitchingDistance() returns unit.nanometers | |
| CustomManyParticleForce.getCutoffDistance() returns unit.nanometers | |
| CustomHbondForce.getCutoffDistance() returns unit.nanometers | |
| CustomGBForce.getCutoffDistance() returns unit.nanometers | |
| Context.getTime() returns unit.picosecond | |
| CompoundIntegrator.getStepSize() returns unit.picosecond | |
| CMAPTorsionForce.getMapParameters() returns size as None | |
| CMAPTorsionForce.getMapParameters() returns energy as unit.kilojoule_per_mole | |
| BrownianIntegrator.getTemperature() returns unit.kelvin | |
| BrownianIntegrator.getFriction() returns unit.picosecond**-1 | |
| AndersenThermostat.getDefaultTemperature() returns unit.kelvin | |
| AndersenThermostat.getDefaultCollisionFrequency() returns unit.picosecond**-1 | |
| AmoebaWcaDispersionForce.getParticleParameters() returns radius as unit.nanometer | |
| AmoebaWcaDispersionForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole | |
| AmoebaWcaDispersionForce.getEpso() returns unit.kilojoule_per_mole | |
| AmoebaWcaDispersionForce.getEpsh() returns unit.kilojoule_per_mole | |
| AmoebaWcaDispersionForce.getRmino() returns unit.nanometer | |
| AmoebaWcaDispersionForce.getRminh() returns unit.nanometer | |
| AmoebaWcaDispersionForce.getAwater() returns 1/(unit.nanometer*unit.nanometer*unit.nanometer) | |
| AmoebaWcaDispersionForce.getDispoff() returns unit.nanometer | |
| AmoebaVdwForce.getParticleParameters() returns parentIndex as None | |
| AmoebaVdwForce.getParticleParameters() returns sigma as unit.nanometer | |
| AmoebaVdwForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole | |
| AmoebaVdwForce.getParticleParameters() returns reductionFactor as None | |
| AmoebaVdwForce.getParticleParameters() returns isAlchemical as None | |
| AmoebaVdwForce.getParticleParameters() returns typeIndex as None | |
| AmoebaVdwForce.getParticleTypeParameters() returns sigma as None | |
| AmoebaVdwForce.getParticleTypeParameters() returns epsilon as unit.nanometer | |
| AmoebaVdwForce.getTypePairParameters() returns type1 as None | |
| AmoebaVdwForce.getTypePairParameters() returns type2 as None | |
| AmoebaVdwForce.getTypePairParameters() returns sigma as None | |
| AmoebaVdwForce.getTypePairParameters() returns epsilon as unit.nanometer | |
| AmoebaVdwForce.getCutoffDistance() returns unit.nanometers | |
| AmoebaVdwForce.getCutoff() returns unit.nanometer | |
| AmoebaMultipoleForce.getCutoffDistance() returns unit.nanometer | |
| AmoebaMultipoleForce.getAEwald() returns 1/unit.nanometer | |
| AmoebaMultipoleForce.getMultipoleParameters() returns charge as unit.elementary_charge | |
| AmoebaMultipoleForce.getMultipoleParameters() returns molecularDipole as unit.elementary_charge*unit.nanometer | |
| AmoebaMultipoleForce.getMultipoleParameters() returns molecularQuadrupole as unit.elementary_charge*unit.nanometer**2 | |
| AmoebaMultipoleForce.getMultipoleParameters() returns axisType as None | |
| AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomZ as None | |
| AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomX as None | |
| AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomY as None | |
| AmoebaMultipoleForce.getMultipoleParameters() returns thole as None | |
| AmoebaMultipoleForce.getMultipoleParameters() returns dampingFactor as None | |
| AmoebaMultipoleForce.getMultipoleParameters() returns polarity as unit.nanometer**3 | |
| AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns charge as unit.elementary_charge | |
| AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns radius as unit.nanometer | |
| AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns scalingFactor as None | |
| AmoebaGeneralizedKirkwoodForce.getProbeRadius() returns unit.nanometer | |
| AmoebaGeneralizedKirkwoodForce.getSurfaceAreaFactor() returns unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) | |
| [ 33%] Creating OpenMM Python module sources with swig... | |
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| /build/source/openmmapi/src/Integrator.cpp:109:52: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] | |
| velocities[i] = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*velocityScale; | |
| ^ ~~ | |
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| /build/source/libraries/lbfgs/src/lbfgs.cpp:494:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] | |
| if (ret = cd.proc_progress(cd.instance, x, g, fx, xnorm, gnorm, step, cd.n, k, ls)) { | |
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| ^ | |
| ( ) | |
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| /build/source/libraries/sfmt/src/SFMT.cpp:631:41: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)? | |
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| if (&rootNode.getOperation() == NULL) | |
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| /build/source/serialization/src/g_fmt.cpp:36:7: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] | |
| g_fmt(register char *b, double x) | |
| ^~~~~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:38:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] | |
| register int i, k; | |
| ^~~~~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:38:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] | |
| register int i, k; | |
| ^~~~~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:39:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] | |
| register char *s; | |
| ^~~~~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:55:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] | |
| while(*b++ = *s++); | |
| ~~~~~^~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:55:14: note: place parentheses around the assignment to silence this warning | |
| while(*b++ = *s++); | |
| ^ | |
| ( ) | |
| /build/source/serialization/src/g_fmt.cpp:55:14: note: use '==' to turn this assignment into an equality comparison | |
| while(*b++ = *s++); | |
| ^ | |
| == | |
| /build/source/serialization/src/g_fmt.cpp:62:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] | |
| while(*b = *s++) | |
| ~~~^~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:62:13: note: place parentheses around the assignment to silence this warning | |
| while(*b = *s++) | |
| ^ | |
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| /build/source/serialization/src/g_fmt.cpp:62:13: note: use '==' to turn this assignment into an equality comparison | |
| while(*b = *s++) | |
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| == | |
| /build/source/serialization/src/g_fmt.cpp:88:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] | |
| while(*b++ = *s++); | |
| ~~~~~^~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:88:14: note: place parentheses around the assignment to silence this warning | |
| while(*b++ = *s++); | |
| ^ | |
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| /build/source/serialization/src/g_fmt.cpp:88:14: note: use '==' to turn this assignment into an equality comparison | |
| while(*b++ = *s++); | |
| ^ | |
| == | |
| /build/source/serialization/src/g_fmt.cpp:91:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] | |
| while(*b = *s++) { | |
| ~~~^~~~~~ | |
| /build/source/serialization/src/g_fmt.cpp:91:12: note: place parentheses around the assignment to silence this warning | |
| while(*b = *s++) { | |
| ^ | |
| ( ) | |
| /build/source/serialization/src/g_fmt.cpp:91:12: note: use '==' to turn this assignment into an equality comparison | |
| while(*b = *s++) { | |
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| if (match(&s,"nf")) { | |
| ^ | |
| /build/source/serialization/src/dtoa.cpp:2652:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] | |
| if (!match(&s,"inity")) | |
| ^ | |
| /build/source/serialization/src/dtoa.cpp:2661:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] | |
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| /build/source/serialization/src/dtoa.cpp:3725:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] | |
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| /build/source/serialization/src/dtoa.cpp:3727:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] | |
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| /build/source/serialization/src/dtoa.cpp:3735:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] | |
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| [ 60%] Built target TestReferenceMonteCarloMembraneBarostat | |
| [ 60%] Linking CXX executable ../../../TestReferenceMonteCarloBarostat | |
| [ 60%] Linking CXX executable ../../../TestReferenceMonteCarloAnisotropicBarostat | |
| [ 60%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o | |
| [ 60%] Built target TestReferenceMonteCarloFlexibleBarostat | |
| [ 60%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o | |
| [ 60%] Built target TestReferenceMonteCarloBarostat | |
| [ 60%] Built target TestReferenceMonteCarloAnisotropicBarostat | |
| [ 60%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o | |
| [ 60%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o | |
| [ 60%] Linking CXX executable ../../../TestReferenceCustomIntegrator | |
| [ 60%] Built target TestReferenceCustomIntegrator | |
| [ 60%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o | |
| [ 60%] Linking CXX executable ../../../TestReferenceRandom | |
| [ 60%] Linking CXX executable ../../../TestReferenceSettle | |
| [ 60%] Built target TestReferenceRandom | |
| [ 60%] Linking CXX executable ../../../TestReferenceRMSDForce | |
| [ 60%] Generating ../src/CudaKernelSources.cpp, ../src/CudaKernelSources.h | |
| [ 60%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaArray.cpp.o | |
| [ 60%] Built target TestReferenceSettle | |
| [ 60%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o | |
| [ 62%] Linking CXX executable ../../../TestReferencePeriodicTorsionForce | |
| [ 62%] Built target TestReferenceRMSDForce | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o | |
| [ 62%] Linking CXX executable ../../../TestReferenceRBTorsionForce | |
| [ 62%] Built target TestReferencePeriodicTorsionForce | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o | |
| [ 62%] Built target TestReferenceRBTorsionForce | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o | |
| [ 62%] Linking CXX executable ../../../TestReferenceVerletIntegrator | |
| [ 62%] Linking CXX executable ../../../TestReferenceVariableVerletIntegrator | |
| [ 62%] Built target TestReferenceVerletIntegrator | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o | |
| [ 62%] Built target TestReferenceVariableVerletIntegrator | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o | |
| /build/source/platforms/cuda/src/CudaArray.cpp:50:13: warning: '~CudaArray' has a non-throwing exception specification but can still throw [-Wexceptions] | |
| throw OpenMMException(str.str()); | |
| ^ | |
| /build/source/platforms/cuda/src/CudaArray.cpp:43:12: note: destructor has a implicit non-throwing exception specification | |
| CudaArray::~CudaArray() { | |
| ^ | |
| [ 62%] Linking CXX executable ../../../TestReferenceCustomNonbondedForce | |
| [ 62%] Linking CXX executable ../../../TestReferenceNoseHooverIntegrator | |
| [ 62%] Built target TestReferenceCustomNonbondedForce | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o | |
| [ 62%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o | |
| [ 62%] Built target TestReferenceNoseHooverIntegrator | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o | |
| 1 warning generated. | |
| [ 64%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaBondedUtilities.cpp.o | |
| [ 64%] Linking CXX executable ../../../TestReferenceEwald | |
| [ 64%] Built target TestReferenceEwald | |
| [ 64%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaContext.cpp.o | |
| [ 64%] Linking CXX executable ../../../TestReferenceNonbondedForce | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o | |
| [ 64%] Built target TestReferenceNonbondedForce | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o | |
| [ 64%] Linking CXX executable ../../../TestReferenceVirtualSites | |
| [ 64%] Built target TestReferenceVirtualSites | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o | |
| [ 64%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o | |
| [ 64%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o | |
| [ 64%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaEvent.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o | |
| [ 64%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o | |
| [ 64%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o | |
| [ 64%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o | |
| [ 64%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o | |
| [ 64%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o | |
| [ 64%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaFFT3D.cpp.o | |
| [ 64%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaIntegrationUtilities.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaKernel.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaKernelFactory.cpp.o | |
| [ 66%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o | |
| [ 66%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaKernels.cpp.o | |
| [ 66%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaNonbondedUtilities.cpp.o | |
| [ 66%] Linking CXX shared library ../../libOpenMMRPMD.so | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaParallelKernels.cpp.o | |
| [ 66%] Built target OpenMMRPMD | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaParameterSet.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaPlatform.cpp.o | |
| [ 66%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaSort.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaProgram.cpp.o | |
| [ 66%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/CommonKernels.cpp.o | |
| [ 66%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o | |
| [ 66%] Building CXX object plugins/cpupme/CMakeFiles/OpenMMPME.dir/src/CpuPmeKernelFactory.cpp.o | |
| [ 68%] Building CXX object serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o | |
| [ 68%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o | |
| [ 68%] Building CXX object serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o | |
| [ 68%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o | |
| [ 68%] Building CXX object plugins/cpupme/CMakeFiles/OpenMMPME.dir/src/CpuPmeKernels.cpp.o | |
| [ 68%] Linking CXX executable ../../TestSerializationNode | |
| [ 68%] Built target TestSerializationNode | |
| [ 68%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o | |
| [ 68%] Linking CXX executable ../../TestSerializeAndersenThermostat | |
| [ 68%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o | |
| [ 68%] Linking CXX shared library ../../../libOpenMMCPU.so | |
| [ 68%] Built target TestSerializeAndersenThermostat | |
| [ 68%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/ComputeArray.cpp.o | |
| [ 68%] Built target OpenMMCPU | |
| [ 68%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o | |
| /build/source/plugins/drude/openmmapi/src/DrudeHelpers.cpp:97:55: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] | |
| velocities[atom] = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*velocityScale; | |
| ^ ~~ | |
| /build/source/plugins/drude/openmmapi/src/DrudeHelpers.cpp:111:55: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] | |
| Vec3 comVelocity = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*sqrt(BOLTZ*temperature*invMass); | |
| ^ ~~ | |
| /build/source/plugins/drude/openmmapi/src/DrudeHelpers.cpp:112:55: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] | |
| Vec3 relVelocity = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*sqrt(BOLTZ*drudeTemperature/redMass); | |
| ^ ~~ | |
| [ 68%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o | |
| 3 warnings generated. | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o | |
| [ 70%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o | |
| [ 70%] Linking CXX executable ../../TestSerializeCMAPTorsion | |
| [ 70%] Built target TestSerializeCMAPTorsion | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o | |
| [ 70%] Linking CXX shared library ../../libOpenMMPME.so | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o | |
| [ 70%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o | |
| [ 70%] Built target OpenMMPME | |
| [ 70%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o | |
| [ 70%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/ComputeContext.cpp.o | |
| [ 70%] Linking CXX executable ../../TestSerializeCMMotionRemover | |
| [ 70%] Built target TestSerializeCMMotionRemover | |
| [ 70%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o | |
| [ 70%] Linking CXX executable ../../TestSerializeCustomAngleForce | |
| [ 70%] Built target TestSerializeCustomAngleForce | |
| [ 70%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o | |
| [ 70%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o | |
| [ 70%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o | |
| [ 70%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o | |
| [ 70%] Linking CXX executable ../../TestSerializeCustomBondForce | |
| [ 70%] Linking CXX executable ../../TestSerializeCustomCVForce | |
| [ 70%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/ComputeForceInfo.cpp.o | |
| [ 70%] Built target TestSerializeCustomBondForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o | |
| [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o | |
| [ 72%] Built target TestSerializeCustomCVForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o | |
| [ 72%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/ComputeParameterSet.cpp.o | |
| [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomCompoundBondForce | |
| [ 72%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/ExpressionUtilities.cpp.o | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomCentroidBondForce | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomExternalForce | |
| [ 72%] Built target TestSerializeCustomCompoundBondForce | |
| [ 72%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/IntegrationUtilities.cpp.o | |
| [ 72%] Built target TestSerializeCustomCentroidBondForce | |
| [ 72%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/src/CudaKernelSources.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o | |
| [ 72%] Built target TestSerializeCustomExternalForce | |
| [ 72%] Building CXX object platforms/cuda/sharedTarget/CMakeFiles/OpenMMCUDA.dir/__/__/common/src/CommonKernelSources.cpp.o | |
| [ 72%] Linking CXX shared library ../../libOpenMMDrude.so | |
| [ 72%] Built target OpenMMDrude | |
| [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/wrappers/AmoebaOpenMMCWrapper.cpp.o | |
| [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/wrappers/AmoebaOpenMMFortranWrapper.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomGBForce | |
| [ 72%] Built target TestSerializeCustomGBForce | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomHbondForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o | |
| [ 72%] Built target TestSerializeCustomHbondForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomManyParticleForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o | |
| [ 72%] Built target TestSerializeCustomManyParticleForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o | |
| [ 72%] Linking CXX shared library ../../libOpenMMAmoeba.so | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomNonbondedForce | |
| [ 72%] Linking CXX executable ../../TestSerializeGBSAOBCForce | |
| [ 72%] Linking CXX executable ../../TestSerializeCustomTorsionForce | |
| [ 72%] Built target OpenMMAmoeba | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/TestSerializeMonteCarloFlexibleBarostat.cpp.o | |
| [ 72%] Built target TestSerializeCustomNonbondedForce | |
| [ 72%] Built target TestSerializeCustomTorsionForce | |
| [ 72%] Built target TestSerializeGBSAOBCForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o | |
| [ 72%] Linking CXX executable ../../TestSerializeHarmonicAngleForce | |
| [ 72%] Linking CXX executable ../../TestSerializeGayBerneForce | |
| [ 72%] Linking CXX executable ../../TestSerializeHarmonicBondForce | |
| [ 72%] Built target TestSerializeHarmonicAngleForce | |
| [ 72%] Built target TestSerializeGayBerneForce | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o | |
| [ 72%] Built target TestSerializeHarmonicBondForce | |
| [ 72%] Linking CXX executable ../../TestSerializeMonteCarloBarostat | |
| [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o | |
| [ 74%] Linking CXX executable ../../TestSerializeMonteCarloAnisotropicBarostat | |
| [ 74%] Built target TestSerializeMonteCarloBarostat | |
| [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o | |
| [ 74%] Built target TestSerializeMonteCarloAnisotropicBarostat | |
| [ 74%] Linking CXX executable ../../TestSerializeMonteCarloFlexibleBarostat | |
| [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o | |
| [ 76%] Linking CXX executable ../../TestSerializeMonteCarloMembraneBarostat | |
| [ 76%] Built target TestSerializeMonteCarloFlexibleBarostat | |
| [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o | |
| [ 76%] Built target TestSerializeMonteCarloMembraneBarostat | |
| [ 76%] Building CXX object tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o | |
| [ 76%] Linking CXX executable ../../TestSerializeNoseHooverIntegrator | |
| /build/source/serialization/tests/TestSerializeSystem.cpp:104:30: warning: expression with side effects will be evaluated despite being used as an operand to 'typeid' [-Wpotentially-evaluated-expression] | |
| ASSERT(typeid(system.getForce(i)) == typeid(system2.getForce(i))) | |
| ^ | |
| /build/source/serialization/tests/TestSerializeSystem.cpp:104:61: warning: expression with side effects will be evaluated despite being used as an operand to 'typeid' [-Wpotentially-evaluated-expression] | |
| ASSERT(typeid(system.getForce(i)) == typeid(system2.getForce(i))) | |
| ^ | |
| [ 76%] Linking CXX executable ../../TestSerializePeriodicTorsionForce | |
| [ 76%] Built target TestSerializeNoseHooverIntegrator | |
| [ 76%] Building CXX object tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o | |
| [ 76%] Linking CXX executable ../../TestSerializeRBTorsionForce | |
| [ 76%] Linking CXX executable ../../TestSerializeRMSDForce | |
| [ 76%] Built target TestSerializePeriodicTorsionForce | |
| [ 76%] Building CXX object tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o | |
| [ 76%] Built target TestSerializeRBTorsionForce | |
| [ 76%] Linking CXX executable ../../TestSerializeNonbondedForce | |
| [ 76%] Building CXX object tests/CMakeFiles/TestParser.dir/TestParser.cpp.o | |
| [ 76%] Building CXX object tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o | |
| [ 76%] Built target TestSerializeRMSDForce | |
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| 2 warnings generated. | |
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| In file included from /build/source/tests/TestVectorize.cpp:39: | |
| /build/source/tests/TestVectorizeGeneric.h:143:34: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] | |
| return float(rand()) / float(RAND_MAX/100.0f) - 50.0f; | |
| ^~~~~~~~~ | |
| /nix/store/7p2s9z3hy317sdwfn0qc5r8qccgynlx1-glibc-2.35-163-dev/include/stdlib.h:87:18: note: expanded from macro 'RAND_MAX' | |
| #define RAND_MAX 2147483647 | |
| ^~~~~~~~~~ | |
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| In file included from /build/source/tests/TestVectorizeAvx.cpp:40: | |
| /build/source/tests/TestVectorizeGeneric.h:143:34: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] | |
| return float(rand()) / float(RAND_MAX/100.0f) - 50.0f; | |
| ^~~~~~~~~ | |
| /nix/store/7p2s9z3hy317sdwfn0qc5r8qccgynlx1-glibc-2.35-163-dev/include/stdlib.h:87:18: note: expanded from macro 'RAND_MAX' | |
| #define RAND_MAX 2147483647 | |
| ^~~~~~~~~~ | |
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| In file included from /build/source/tests/TestVectorizeAvx2.cpp:48: | |
| /build/source/tests/TestVectorizeGeneric.h:143:34: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] | |
| return float(rand()) / float(RAND_MAX/100.0f) - 50.0f; | |
| ^~~~~~~~~ | |
| /nix/store/7p2s9z3hy317sdwfn0qc5r8qccgynlx1-glibc-2.35-163-dev/include/stdlib.h:87:18: note: expanded from macro 'RAND_MAX' | |
| #define RAND_MAX 2147483647 | |
| ^~~~~~~~~~ | |
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| [ 88%] Building CXX object platforms/cuda/tests/CMakeFiles/TestCudaVariableVerletIntegrator.dir/TestCudaVariableVerletIntegrator.cpp.o | |
| [ 88%] Building CXX object platforms/cuda/tests/CMakeFiles/TestCudaSort.dir/TestCudaSort.cpp.o | |
| [ 88%] Built target TestCudaCustomIntegrator | |
| [ 88%] Building CXX object platforms/cuda/tests/CMakeFiles/TestCudaVerletIntegrator.dir/TestCudaVerletIntegrator.cpp.o | |
| [ 90%] Linking CXX executable ../../../TestCudaPeriodicTorsionForce | |
| [ 90%] Linking CXX executable ../../../TestCudaSettle | |
| [ 90%] Linking CXX executable ../../../TestCudaRMSDForce | |
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| [ 90%] Built target TestCudaPeriodicTorsionForce | |
| [ 90%] Building CXX object platforms/cuda/tests/CMakeFiles/TestCudaVirtualSites.dir/TestCudaVirtualSites.cpp.o | |
| [ 90%] Built target TestCudaSettle | |
| [ 90%] Generating src/CudaAmoebaKernelSources.cpp, src/CudaAmoebaKernelSources.h | |
| [ 90%] Built target TestCudaRMSDForce | |
| [ 90%] Building CXX object plugins/amoeba/platforms/cuda/CMakeFiles/OpenMMAmoebaCUDA.dir/src/AmoebaCudaKernelFactory.cpp.o | |
| [ 90%] Linking CXX executable ../../../TestCudaNoseHooverIntegrator | |
| [ 90%] Building CXX object plugins/rpmd/platforms/cuda/CMakeFiles/OpenMMRPMDCUDA.dir/src/CudaRpmdKernelFactory.cpp.o | |
| [ 90%] Built target TestCudaRBTorsionForce | |
| [ 90%] Building CXX object plugins/amoeba/platforms/cuda/CMakeFiles/OpenMMAmoebaCUDA.dir/src/AmoebaCudaKernels.cpp.o | |
| [ 90%] Linking CXX executable ../../../TestCudaRandom | |
| [ 90%] Built target TestCudaNoseHooverIntegrator | |
| [ 90%] Building CXX object plugins/drude/platforms/cuda/CMakeFiles/OpenMMDrudeCUDA.dir/src/CudaDrudeKernelFactory.cpp.o | |
| [ 90%] Linking CXX executable ../../../TestCudaSort | |
| [ 90%] Built target TestCudaRandom | |
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| [ 90%] Built target TestCudaSort | |
| [ 92%] Building CXX object plugins/cudacompiler/CMakeFiles/OpenMMCudaCompiler.dir/src/CudaCompilerKernels.cpp.o | |
| [ 92%] Linking CXX executable ../../../TestCudaCustomNonbondedForce | |
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| [ 92%] Built target TestCudaCustomNonbondedForce | |
| [ 92%] Building CXX object plugins/drude/platforms/cuda/CMakeFiles/OpenMMDrudeCUDA.dir/__/common/src/CommonDrudeKernels.cpp.o | |
| [ 92%] Built target TestCudaVariableVerletIntegrator | |
| [ 92%] Building CXX object plugins/drude/platforms/cuda/CMakeFiles/OpenMMDrudeCUDA.dir/__/common/src/CommonDrudeKernelSources.cpp.o | |
| [ 92%] Linking CXX executable ../../../TestCudaEwald | |
| [ 92%] Built target TestCudaVerletIntegrator | |
| [ 92%] Building CXX object plugins/amoeba/platforms/cuda/CMakeFiles/OpenMMAmoebaCUDA.dir/__/common/src/AmoebaCommonKernels.cpp.o | |
| [ 92%] Built target TestCudaEwald | |
| [ 92%] Building CXX object plugins/amoeba/platforms/cuda/CMakeFiles/OpenMMAmoebaCUDA.dir/__/common/src/CommonAmoebaKernelSources.cpp.o | |
| [ 92%] Building CXX object plugins/rpmd/platforms/cuda/CMakeFiles/OpenMMRPMDCUDA.dir/__/common/src/CommonRpmdKernels.cpp.o | |
| [ 92%] Building CXX object plugins/rpmd/platforms/cuda/CMakeFiles/OpenMMRPMDCUDA.dir/__/common/src/CommonRpmdKernelSources.cpp.o | |
| [ 92%] Building CXX object plugins/amoeba/platforms/cuda/CMakeFiles/OpenMMAmoebaCUDA.dir/src/CudaAmoebaKernelSources.cpp.o | |
| [ 92%] Linking CXX executable ../../../TestCudaNonbondedForce | |
| [ 92%] Built target TestCudaNonbondedForce | |
| [ 92%] Linking CXX executable ../../../TestCudaVirtualSites | |
| [ 92%] Built target TestCudaVirtualSites | |
| [ 92%] Linking CXX shared library ../../../../libOpenMMDrudeCUDA.so | |
| [ 92%] Built target OpenMMDrudeCUDA | |
| [ 92%] Building CXX object plugins/drude/platforms/cuda/tests/CMakeFiles/TestCudaDrudeNoseHoover.dir/TestCudaDrudeNoseHoover.cpp.o | |
| [ 92%] Building CXX object plugins/drude/platforms/cuda/tests/CMakeFiles/TestCudaDrudeLangevinIntegrator.dir/TestCudaDrudeLangevinIntegrator.cpp.o | |
| [ 92%] Building CXX object plugins/drude/platforms/cuda/tests/CMakeFiles/TestCudaDrudeForce.dir/TestCudaDrudeForce.cpp.o | |
| [ 92%] Building CXX object plugins/drude/platforms/cuda/tests/CMakeFiles/TestCudaDrudeSCFIntegrator.dir/TestCudaDrudeSCFIntegrator.cpp.o | |
| [ 92%] Linking CXX shared library ../../libOpenMMCudaCompiler.so | |
| [ 92%] Built target OpenMMCudaCompiler | |
| [ 92%] Building CXX object plugins/cudacompiler/tests/CMakeFiles/TestCudaCompiler.dir/TestCudaCompiler.cpp.o | |
| [ 92%] Linking CXX shared library ../../../../libOpenMMRPMDCUDA.so | |
| [ 92%] Built target OpenMMRPMDCUDA | |
| [ 92%] Building CXX object plugins/rpmd/platforms/cuda/tests/CMakeFiles/TestCudaRpmd.dir/TestCudaRpmd.cpp.o | |
| [ 92%] Linking CXX executable ../../../TestCudaCompiler | |
| [ 94%] Linking CXX executable ../../../../../TestCudaDrudeForce | |
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| [ 94%] Built target TestCudaCompiler | |
| [ 94%] Built target TestCudaDrudeForce | |
| [ 94%] Linking CXX executable ../../../../../TestCudaDrudeNoseHoover | |
| [ 94%] Built target TestCudaDrudeSCFIntegrator | |
| [ 94%] Built target TestCudaDrudeNoseHoover | |
| [ 94%] Linking CXX executable ../../../../../TestCudaDrudeLangevinIntegrator | |
| [ 94%] Built target TestCudaDrudeLangevinIntegrator | |
| [ 94%] Linking CXX executable ../../../../../TestCudaRpmd | |
| [ 94%] Built target TestCudaRpmd | |
| [ 96%] Linking CXX shared library ../../../../libOpenMMAmoebaCUDA.so | |
| [ 96%] Built target OpenMMAmoebaCUDA | |
| [ 96%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaAmoebaExtrapolatedPolarization.dir/TestCudaAmoebaExtrapolatedPolarization.cpp.o | |
| [ 96%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaWcaDispersionForce.dir/TestCudaWcaDispersionForce.cpp.o | |
| [ 96%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaAmoebaTorsionTorsionForce.dir/TestCudaAmoebaTorsionTorsionForce.cpp.o | |
| [ 96%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaAmoebaGeneralizedKirkwoodForce.dir/TestCudaAmoebaGeneralizedKirkwoodForce.cpp.o | |
| [ 96%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaAmoebaMultipoleForce.dir/TestCudaAmoebaMultipoleForce.cpp.o | |
| [ 98%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaHippoNonbondedForce.dir/TestCudaHippoNonbondedForce.cpp.o | |
| [ 98%] Building CXX object plugins/amoeba/platforms/cuda/tests/CMakeFiles/TestCudaAmoebaVdwForce.dir/TestCudaAmoebaVdwForce.cpp.o | |
| [100%] Linking CXX executable ../../../../../TestCudaWcaDispersionForce | |
| [100%] Built target TestCudaWcaDispersionForce | |
| [100%] Linking CXX executable ../../../../../TestCudaAmoebaTorsionTorsionForce | |
| [100%] Built target TestCudaAmoebaTorsionTorsionForce | |
| [100%] Linking CXX executable ../../../../../TestCudaAmoebaGeneralizedKirkwoodForce | |
| [100%] Built target TestCudaAmoebaGeneralizedKirkwoodForce | |
| [100%] Linking CXX executable ../../../../../TestCudaAmoebaExtrapolatedPolarization | |
| [100%] Built target TestCudaAmoebaExtrapolatedPolarization | |
| [100%] Linking CXX executable ../../../../../TestCudaHippoNonbondedForce | |
| [100%] Built target TestCudaHippoNonbondedForce | |
| [100%] Linking CXX executable ../../../../../TestCudaAmoebaVdwForce | |
| [100%] Built target TestCudaAmoebaVdwForce | |
| [100%] Linking CXX executable ../../../../../TestCudaAmoebaMultipoleForce | |
| [100%] Built target TestCudaAmoebaMultipoleForce | |
| buildPhase completed in 1 minutes 21 seconds | |
| running tests | |
| check flags: SHELL=/nix/store/nfgpn9av331q7zi1dl6d5qpir60y513s-bash-5.1-p16/bin/bash VERBOSE=y test | |
| Running tests... | |
| /nix/store/vh76h64xifdiylk1dfc9s6mgpzazngxs-cmake-3.24.3/bin/ctest --force-new-ctest-process | |
| Test project /build/source/build | |
| Start 1: TestReferenceAndersenThermostat | |
| Start 2: TestReferenceCMAPTorsionForce | |
| Start 3: TestReferenceCMMotionRemover | |
| Start 4: TestReferenceCheckpoints | |
| Start 5: TestReferenceCompoundIntegrator | |
| Start 6: TestReferenceCustomAngleForce | |
| Start 7: TestReferenceCustomBondForce | |
| Start 8: TestReferenceCustomCVForce | |
| Start 9: TestReferenceCustomCentroidBondForce | |
| Start 10: TestReferenceCustomCompoundBondForce | |
| Start 11: TestReferenceCustomExternalForce | |
| Start 12: TestReferenceCustomGBForce | |
| 1/271 Test #3: TestReferenceCMMotionRemover ................... Passed 0.01 sec | |
| Start 13: TestReferenceCustomHbondForce | |
| 2/271 Test #6: TestReferenceCustomAngleForce .................. Passed 0.01 sec | |
| Start 14: TestReferenceCustomIntegrator | |
| 3/271 Test #7: TestReferenceCustomBondForce ................... Passed 0.01 sec | |
| Start 15: TestReferenceCustomManyParticleForce | |
| 4/271 Test #2: TestReferenceCMAPTorsionForce .................. Passed 0.01 sec | |
| Start 16: TestReferenceCustomNonbondedForce | |
| 5/271 Test #8: TestReferenceCustomCVForce ..................... Passed 0.01 sec | |
| Start 17: TestReferenceCustomTorsionForce | |
| 6/271 Test #13: TestReferenceCustomHbondForce .................. Passed 0.00 sec | |
| Start 18: TestReferenceDispersionPME | |
| 7/271 Test #11: TestReferenceCustomExternalForce ............... Passed 0.01 sec | |
| Start 19: TestReferenceEwald | |
| 8/271 Test #5: TestReferenceCompoundIntegrator ................ Passed 0.01 sec | |
| Start 20: TestReferenceGBSAOBCForce | |
| 9/271 Test #17: TestReferenceCustomTorsionForce ................ Passed 0.00 sec | |
| Start 21: TestReferenceGayBerneForce | |
| 10/271 Test #21: TestReferenceGayBerneForce ..................... Passed 0.02 sec | |
| Start 22: TestReferenceHarmonicAngleForce | |
| 11/271 Test #22: TestReferenceHarmonicAngleForce ................ Passed 0.00 sec | |
| Start 23: TestReferenceHarmonicBondForce | |
| 12/271 Test #23: TestReferenceHarmonicBondForce ................. Passed 0.00 sec | |
| Start 24: TestReferenceKineticEnergy | |
| 13/271 Test #24: TestReferenceKineticEnergy ..................... Passed 0.00 sec | |
| Start 25: TestReferenceLangevinMiddleIntegrator | |
| 14/271 Test #9: TestReferenceCustomCentroidBondForce ........... Passed 0.05 sec | |
| Start 26: TestReferenceLocalEnergyMinimizer | |
| 15/271 Test #10: TestReferenceCustomCompoundBondForce ........... Passed 0.06 sec | |
| Start 27: TestReferenceMonteCarloAnisotropicBarostat | |
| 16/271 Test #4: TestReferenceCheckpoints ....................... Passed 0.11 sec | |
| Start 28: TestReferenceMonteCarloBarostat | |
| 17/271 Test #1: TestReferenceAndersenThermostat ................ Passed 0.15 sec | |
| Start 29: TestReferenceMonteCarloFlexibleBarostat | |
| 18/271 Test #12: TestReferenceCustomGBForce ..................... Passed 0.15 sec | |
| Start 30: TestReferenceMonteCarloMembraneBarostat | |
| 19/271 Test #28: TestReferenceMonteCarloBarostat ................ Passed 0.30 sec | |
| Start 31: TestReferenceNeighborList | |
| 20/271 Test #31: TestReferenceNeighborList ...................... Passed 0.03 sec | |
| Start 32: TestReferenceNonbondedForce | |
| 21/271 Test #29: TestReferenceMonteCarloFlexibleBarostat ........ Passed 0.31 sec | |
| Start 33: TestReferenceNoseHooverIntegrator | |
| 22/271 Test #32: TestReferenceNonbondedForce .................... Passed 0.39 sec | |
| Start 34: TestReferencePeriodicTorsionForce | |
| 23/271 Test #34: TestReferencePeriodicTorsionForce .............. Passed 0.00 sec | |
| Start 35: TestReferenceRBTorsionForce | |
| 24/271 Test #35: TestReferenceRBTorsionForce .................... Passed 0.00 sec | |
| Start 36: TestReferenceRMSDForce | |
| 25/271 Test #36: TestReferenceRMSDForce ......................... Passed 0.00 sec | |
| Start 37: TestReferenceRandom | |
| 26/271 Test #14: TestReferenceCustomIntegrator .................. Passed 0.86 sec | |
| Start 38: TestReferenceSettle | |
| 27/271 Test #38: TestReferenceSettle ............................ Passed 0.02 sec | |
| Start 39: TestReferenceVariableVerletIntegrator | |
| 28/271 Test #30: TestReferenceMonteCarloMembraneBarostat ........ Passed 0.82 sec | |
| Start 40: TestReferenceVerletIntegrator | |
| 29/271 Test #25: TestReferenceLangevinMiddleIntegrator .......... Passed 0.97 sec | |
| Start 41: TestReferenceVirtualSites | |
| 30/271 Test #41: TestReferenceVirtualSites ...................... Passed 0.02 sec | |
| Start 42: TestCudaAndersenThermostatSingle | |
| 31/271 Test #42: TestCudaAndersenThermostatSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaAndersenThermostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 43: TestCudaAndersenThermostatMixed | |
| 32/271 Test #43: TestCudaAndersenThermostatMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaAndersenThermostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 44: TestCudaAndersenThermostatDouble | |
| 33/271 Test #44: TestCudaAndersenThermostatDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaAndersenThermostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 45: TestCudaCMAPTorsionForceSingle | |
| 34/271 Test #45: TestCudaCMAPTorsionForceSingle .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCMAPTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 46: TestCudaCMAPTorsionForceMixed | |
| 35/271 Test #46: TestCudaCMAPTorsionForceMixed ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCMAPTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 47: TestCudaCMAPTorsionForceDouble | |
| 36/271 Test #47: TestCudaCMAPTorsionForceDouble .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCMAPTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 48: TestCudaCMMotionRemoverSingle | |
| 37/271 Test #48: TestCudaCMMotionRemoverSingle ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCMMotionRemover: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 49: TestCudaCMMotionRemoverMixed | |
| 38/271 Test #49: TestCudaCMMotionRemoverMixed ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaCMMotionRemover: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 50: TestCudaCMMotionRemoverDouble | |
| 39/271 Test #50: TestCudaCMMotionRemoverDouble ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCMMotionRemover: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 51: TestCudaCheckpointsSingle | |
| 40/271 Test #51: TestCudaCheckpointsSingle ......................***Failed 0.00 sec | |
| /build/source/build/TestCudaCheckpoints: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 52: TestCudaCheckpointsMixed | |
| 41/271 Test #52: TestCudaCheckpointsMixed .......................***Failed 0.00 sec | |
| /build/source/build/TestCudaCheckpoints: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 53: TestCudaCheckpointsDouble | |
| 42/271 Test #53: TestCudaCheckpointsDouble ......................***Failed 0.01 sec | |
| /build/source/build/TestCudaCheckpoints: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 54: TestCudaCompoundIntegratorSingle | |
| 43/271 Test #54: TestCudaCompoundIntegratorSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaCompoundIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 55: TestCudaCompoundIntegratorMixed | |
| 44/271 Test #55: TestCudaCompoundIntegratorMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaCompoundIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 56: TestCudaCompoundIntegratorDouble | |
| 45/271 Test #56: TestCudaCompoundIntegratorDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaCompoundIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 57: TestCudaCustomAngleForceSingle | |
| 46/271 Test #57: TestCudaCustomAngleForceSingle .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomAngleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 58: TestCudaCustomAngleForceMixed | |
| 47/271 Test #58: TestCudaCustomAngleForceMixed ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomAngleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 59: TestCudaCustomAngleForceDouble | |
| 48/271 Test #59: TestCudaCustomAngleForceDouble .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomAngleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 60: TestCudaCustomBondForceSingle | |
| 49/271 Test #60: TestCudaCustomBondForceSingle ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 61: TestCudaCustomBondForceMixed | |
| 50/271 Test #61: TestCudaCustomBondForceMixed ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 62: TestCudaCustomBondForceDouble | |
| 51/271 Test #62: TestCudaCustomBondForceDouble ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 63: TestCudaCustomCVForceSingle | |
| 52/271 Test #63: TestCudaCustomCVForceSingle ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCVForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 64: TestCudaCustomCVForceMixed | |
| 53/271 Test #64: TestCudaCustomCVForceMixed .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCVForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 65: TestCudaCustomCVForceDouble | |
| 54/271 Test #65: TestCudaCustomCVForceDouble ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCVForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 66: TestCudaCustomCentroidBondForceSingle | |
| 55/271 Test #66: TestCudaCustomCentroidBondForceSingle ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCentroidBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 67: TestCudaCustomCentroidBondForceMixed | |
| 56/271 Test #67: TestCudaCustomCentroidBondForceMixed ...........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCentroidBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 68: TestCudaCustomCentroidBondForceDouble | |
| 57/271 Test #68: TestCudaCustomCentroidBondForceDouble ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCentroidBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 69: TestCudaCustomCompoundBondForceSingle | |
| 58/271 Test #69: TestCudaCustomCompoundBondForceSingle ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCompoundBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 70: TestCudaCustomCompoundBondForceMixed | |
| 59/271 Test #70: TestCudaCustomCompoundBondForceMixed ...........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCompoundBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 71: TestCudaCustomCompoundBondForceDouble | |
| 60/271 Test #71: TestCudaCustomCompoundBondForceDouble ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomCompoundBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 72: TestCudaCustomExternalForceSingle | |
| 61/271 Test #72: TestCudaCustomExternalForceSingle ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomExternalForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 73: TestCudaCustomExternalForceMixed | |
| 62/271 Test #73: TestCudaCustomExternalForceMixed ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomExternalForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 74: TestCudaCustomExternalForceDouble | |
| 63/271 Test #74: TestCudaCustomExternalForceDouble ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomExternalForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 75: TestCudaCustomGBForceSingle | |
| 64/271 Test #75: TestCudaCustomGBForceSingle ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomGBForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 76: TestCudaCustomGBForceMixed | |
| 65/271 Test #76: TestCudaCustomGBForceMixed .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomGBForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 77: TestCudaCustomGBForceDouble | |
| 66/271 Test #77: TestCudaCustomGBForceDouble ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomGBForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 78: TestCudaCustomHbondForceSingle | |
| 67/271 Test #78: TestCudaCustomHbondForceSingle .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomHbondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 79: TestCudaCustomHbondForceMixed | |
| 68/271 Test #79: TestCudaCustomHbondForceMixed ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomHbondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 80: TestCudaCustomHbondForceDouble | |
| 69/271 Test #80: TestCudaCustomHbondForceDouble .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomHbondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 81: TestCudaCustomIntegratorSingle | |
| 70/271 Test #81: TestCudaCustomIntegratorSingle .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 82: TestCudaCustomIntegratorMixed | |
| 71/271 Test #82: TestCudaCustomIntegratorMixed ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 83: TestCudaCustomIntegratorDouble | |
| 72/271 Test #83: TestCudaCustomIntegratorDouble .................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 84: TestCudaCustomManyParticleForceSingle | |
| 73/271 Test #84: TestCudaCustomManyParticleForceSingle ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomManyParticleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 85: TestCudaCustomManyParticleForceMixed | |
| 74/271 Test #85: TestCudaCustomManyParticleForceMixed ...........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomManyParticleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 86: TestCudaCustomManyParticleForceDouble | |
| 75/271 Test #86: TestCudaCustomManyParticleForceDouble ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomManyParticleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 87: TestCudaCustomNonbondedForceSingle | |
| 76/271 Test #87: TestCudaCustomNonbondedForceSingle .............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 88: TestCudaCustomNonbondedForceMixed | |
| 77/271 Test #88: TestCudaCustomNonbondedForceMixed ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 89: TestCudaCustomNonbondedForceDouble | |
| 78/271 Test #89: TestCudaCustomNonbondedForceDouble .............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 90: TestCudaCustomTorsionForceSingle | |
| 79/271 Test #90: TestCudaCustomTorsionForceSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 91: TestCudaCustomTorsionForceMixed | |
| 80/271 Test #91: TestCudaCustomTorsionForceMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 92: TestCudaCustomTorsionForceDouble | |
| 81/271 Test #92: TestCudaCustomTorsionForceDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaCustomTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 93: TestCudaDispersionPMESingle | |
| 82/271 Test #93: TestCudaDispersionPMESingle ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaDispersionPME: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 94: TestCudaDispersionPMEMixed | |
| 83/271 Test #94: TestCudaDispersionPMEMixed .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaDispersionPME: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 95: TestCudaDispersionPMEDouble | |
| 84/271 Test #95: TestCudaDispersionPMEDouble ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaDispersionPME: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 96: TestCudaEwaldSingle | |
| 85/271 Test #96: TestCudaEwaldSingle ............................***Failed 0.00 sec | |
| /build/source/build/TestCudaEwald: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 97: TestCudaEwaldMixed | |
| 86/271 Test #97: TestCudaEwaldMixed .............................***Failed 0.00 sec | |
| /build/source/build/TestCudaEwald: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 98: TestCudaEwaldDouble | |
| 87/271 Test #98: TestCudaEwaldDouble ............................***Failed 0.00 sec | |
| /build/source/build/TestCudaEwald: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 99: TestCudaFFT3DSingle | |
| 88/271 Test #99: TestCudaFFT3DSingle ............................***Failed 0.00 sec | |
| /build/source/build/TestCudaFFT3D: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 100: TestCudaFFT3DMixed | |
| 89/271 Test #37: TestReferenceRandom ............................ Passed 0.27 sec | |
| Start 101: TestCudaFFT3DDouble | |
| 90/271 Test #100: TestCudaFFT3DMixed .............................***Failed 0.00 sec | |
| /build/source/build/TestCudaFFT3D: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 102: TestCudaGBSAOBCForceSingle | |
| 91/271 Test #101: TestCudaFFT3DDouble ............................***Failed 0.00 sec | |
| /build/source/build/TestCudaFFT3D: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 103: TestCudaGBSAOBCForceMixed | |
| 92/271 Test #102: TestCudaGBSAOBCForceSingle .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaGBSAOBCForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 104: TestCudaGBSAOBCForceDouble | |
| 93/271 Test #103: TestCudaGBSAOBCForceMixed ......................***Failed 0.00 sec | |
| /build/source/build/TestCudaGBSAOBCForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 105: TestCudaGayBerneForceSingle | |
| 94/271 Test #104: TestCudaGBSAOBCForceDouble .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaGBSAOBCForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 106: TestCudaGayBerneForceMixed | |
| 95/271 Test #105: TestCudaGayBerneForceSingle ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaGayBerneForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 107: TestCudaGayBerneForceDouble | |
| 96/271 Test #106: TestCudaGayBerneForceMixed .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaGayBerneForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 108: TestCudaHarmonicAngleForceSingle | |
| 97/271 Test #107: TestCudaGayBerneForceDouble ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaGayBerneForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 109: TestCudaHarmonicAngleForceMixed | |
| 98/271 Test #108: TestCudaHarmonicAngleForceSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaHarmonicAngleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 110: TestCudaHarmonicAngleForceDouble | |
| 99/271 Test #109: TestCudaHarmonicAngleForceMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaHarmonicAngleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 111: TestCudaHarmonicBondForceSingle | |
| 100/271 Test #110: TestCudaHarmonicAngleForceDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaHarmonicAngleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 112: TestCudaHarmonicBondForceMixed | |
| 101/271 Test #111: TestCudaHarmonicBondForceSingle ................***Failed 0.00 sec | |
| /build/source/build/TestCudaHarmonicBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 113: TestCudaHarmonicBondForceDouble | |
| 102/271 Test #112: TestCudaHarmonicBondForceMixed .................***Failed 0.00 sec | |
| /build/source/build/TestCudaHarmonicBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 114: TestCudaLangevinMiddleIntegratorSingle | |
| 103/271 Test #113: TestCudaHarmonicBondForceDouble ................***Failed 0.00 sec | |
| /build/source/build/TestCudaHarmonicBondForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 115: TestCudaLangevinMiddleIntegratorMixed | |
| 104/271 Test #114: TestCudaLangevinMiddleIntegratorSingle .........***Failed 0.00 sec | |
| /build/source/build/TestCudaLangevinMiddleIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 116: TestCudaLangevinMiddleIntegratorDouble | |
| 105/271 Test #115: TestCudaLangevinMiddleIntegratorMixed ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaLangevinMiddleIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 117: TestCudaLocalEnergyMinimizerSingle | |
| 106/271 Test #116: TestCudaLangevinMiddleIntegratorDouble .........***Failed 0.00 sec | |
| /build/source/build/TestCudaLangevinMiddleIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 118: TestCudaLocalEnergyMinimizerMixed | |
| 107/271 Test #117: TestCudaLocalEnergyMinimizerSingle .............***Failed 0.00 sec | |
| /build/source/build/TestCudaLocalEnergyMinimizer: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 119: TestCudaLocalEnergyMinimizerDouble | |
| 108/271 Test #118: TestCudaLocalEnergyMinimizerMixed ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaLocalEnergyMinimizer: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 120: TestCudaMonteCarloAnisotropicBarostatSingle | |
| 109/271 Test #119: TestCudaLocalEnergyMinimizerDouble .............***Failed 0.00 sec | |
| /build/source/build/TestCudaLocalEnergyMinimizer: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 121: TestCudaMonteCarloAnisotropicBarostatMixed | |
| 110/271 Test #120: TestCudaMonteCarloAnisotropicBarostatSingle ....***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloAnisotropicBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 122: TestCudaMonteCarloAnisotropicBarostatDouble | |
| 111/271 Test #121: TestCudaMonteCarloAnisotropicBarostatMixed .....***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloAnisotropicBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 123: TestCudaMonteCarloBarostatSingle | |
| 112/271 Test #122: TestCudaMonteCarloAnisotropicBarostatDouble ....***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloAnisotropicBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 124: TestCudaMonteCarloBarostatMixed | |
| 113/271 Test #123: TestCudaMonteCarloBarostatSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 125: TestCudaMonteCarloBarostatDouble | |
| 114/271 Test #124: TestCudaMonteCarloBarostatMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 126: TestCudaMonteCarloFlexibleBarostatSingle | |
| 115/271 Test #125: TestCudaMonteCarloBarostatDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 127: TestCudaMonteCarloFlexibleBarostatMixed | |
| 116/271 Test #126: TestCudaMonteCarloFlexibleBarostatSingle .......***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloFlexibleBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 128: TestCudaMonteCarloFlexibleBarostatDouble | |
| 117/271 Test #127: TestCudaMonteCarloFlexibleBarostatMixed ........***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloFlexibleBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 129: TestCudaMultipleForcesSingle | |
| 118/271 Test #128: TestCudaMonteCarloFlexibleBarostatDouble .......***Failed 0.00 sec | |
| /build/source/build/TestCudaMonteCarloFlexibleBarostat: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 130: TestCudaMultipleForcesMixed | |
| 119/271 Test #129: TestCudaMultipleForcesSingle ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaMultipleForces: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 131: TestCudaMultipleForcesDouble | |
| 120/271 Test #130: TestCudaMultipleForcesMixed ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaMultipleForces: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 132: TestCudaNonbondedForceSingle | |
| 121/271 Test #131: TestCudaMultipleForcesDouble ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaMultipleForces: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 133: TestCudaNonbondedForceMixed | |
| 122/271 Test #132: TestCudaNonbondedForceSingle ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 134: TestCudaNonbondedForceDouble | |
| 123/271 Test #133: TestCudaNonbondedForceMixed ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 135: TestCudaNoseHooverIntegratorSingle | |
| 124/271 Test #134: TestCudaNonbondedForceDouble ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 136: TestCudaNoseHooverIntegratorMixed | |
| 125/271 Test #135: TestCudaNoseHooverIntegratorSingle .............***Failed 0.00 sec | |
| /build/source/build/TestCudaNoseHooverIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 137: TestCudaNoseHooverIntegratorDouble | |
| 126/271 Test #136: TestCudaNoseHooverIntegratorMixed ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaNoseHooverIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 138: TestCudaPeriodicTorsionForceSingle | |
| 127/271 Test #137: TestCudaNoseHooverIntegratorDouble .............***Failed 0.00 sec | |
| /build/source/build/TestCudaNoseHooverIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 139: TestCudaPeriodicTorsionForceMixed | |
| 128/271 Test #138: TestCudaPeriodicTorsionForceSingle .............***Failed 0.00 sec | |
| /build/source/build/TestCudaPeriodicTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 140: TestCudaPeriodicTorsionForceDouble | |
| 129/271 Test #139: TestCudaPeriodicTorsionForceMixed ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaPeriodicTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 141: TestCudaRBTorsionForceSingle | |
| 130/271 Test #140: TestCudaPeriodicTorsionForceDouble .............***Failed 0.00 sec | |
| /build/source/build/TestCudaPeriodicTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 142: TestCudaRBTorsionForceMixed | |
| 131/271 Test #141: TestCudaRBTorsionForceSingle ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaRBTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 143: TestCudaRBTorsionForceDouble | |
| 132/271 Test #142: TestCudaRBTorsionForceMixed ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaRBTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 144: TestCudaRMSDForceSingle | |
| 133/271 Test #143: TestCudaRBTorsionForceDouble ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaRBTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 145: TestCudaRMSDForceMixed | |
| 134/271 Test #144: TestCudaRMSDForceSingle ........................***Failed 0.00 sec | |
| /build/source/build/TestCudaRMSDForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 146: TestCudaRMSDForceDouble | |
| 135/271 Test #145: TestCudaRMSDForceMixed .........................***Failed 0.00 sec | |
| /build/source/build/TestCudaRMSDForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 147: TestCudaRandomSingle | |
| 136/271 Test #146: TestCudaRMSDForceDouble ........................***Failed 0.00 sec | |
| /build/source/build/TestCudaRMSDForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 148: TestCudaRandomMixed | |
| 137/271 Test #147: TestCudaRandomSingle ...........................***Failed 0.00 sec | |
| /build/source/build/TestCudaRandom: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 149: TestCudaRandomDouble | |
| 138/271 Test #148: TestCudaRandomMixed ............................***Failed 0.00 sec | |
| /build/source/build/TestCudaRandom: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 150: TestCudaSettleSingle | |
| 139/271 Test #149: TestCudaRandomDouble ...........................***Failed 0.00 sec | |
| /build/source/build/TestCudaRandom: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 151: TestCudaSettleMixed | |
| 140/271 Test #150: TestCudaSettleSingle ...........................***Failed 0.00 sec | |
| /build/source/build/TestCudaSettle: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 152: TestCudaSettleDouble | |
| 141/271 Test #151: TestCudaSettleMixed ............................***Failed 0.00 sec | |
| /build/source/build/TestCudaSettle: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 153: TestCudaSortSingle | |
| 142/271 Test #152: TestCudaSettleDouble ...........................***Failed 0.00 sec | |
| /build/source/build/TestCudaSettle: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 154: TestCudaSortMixed | |
| 143/271 Test #153: TestCudaSortSingle .............................***Failed 0.00 sec | |
| /build/source/build/TestCudaSort: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 155: TestCudaSortDouble | |
| 144/271 Test #154: TestCudaSortMixed ..............................***Failed 0.00 sec | |
| /build/source/build/TestCudaSort: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 156: TestCudaVariableVerletIntegratorSingle | |
| 145/271 Test #155: TestCudaSortDouble .............................***Failed 0.00 sec | |
| /build/source/build/TestCudaSort: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 157: TestCudaVariableVerletIntegratorMixed | |
| 146/271 Test #156: TestCudaVariableVerletIntegratorSingle .........***Failed 0.00 sec | |
| /build/source/build/TestCudaVariableVerletIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 158: TestCudaVariableVerletIntegratorDouble | |
| 147/271 Test #157: TestCudaVariableVerletIntegratorMixed ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaVariableVerletIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 159: TestCudaVerletIntegratorSingle | |
| 148/271 Test #158: TestCudaVariableVerletIntegratorDouble .........***Failed 0.00 sec | |
| /build/source/build/TestCudaVariableVerletIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 160: TestCudaVerletIntegratorMixed | |
| 149/271 Test #159: TestCudaVerletIntegratorSingle .................***Failed 0.00 sec | |
| /build/source/build/TestCudaVerletIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 161: TestCudaVerletIntegratorDouble | |
| 150/271 Test #160: TestCudaVerletIntegratorMixed ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaVerletIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 162: TestCudaVirtualSitesSingle | |
| 151/271 Test #161: TestCudaVerletIntegratorDouble .................***Failed 0.00 sec | |
| /build/source/build/TestCudaVerletIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 163: TestCudaVirtualSitesMixed | |
| 152/271 Test #162: TestCudaVirtualSitesSingle .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaVirtualSites: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 164: TestCudaVirtualSitesDouble | |
| 153/271 Test #163: TestCudaVirtualSitesMixed ......................***Failed 0.00 sec | |
| /build/source/build/TestCudaVirtualSites: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 165: TestCpuCheckpoints | |
| 154/271 Test #164: TestCudaVirtualSitesDouble .....................***Failed 0.00 sec | |
| /build/source/build/TestCudaVirtualSites: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 166: TestCpuCompoundIntegrator | |
| 155/271 Test #19: TestReferenceEwald ............................. Passed 1.23 sec | |
| Start 167: TestCpuCustomGBForce | |
| 156/271 Test #20: TestReferenceGBSAOBCForce ...................... Passed 1.23 sec | |
| Start 168: TestCpuCustomManyParticleForce | |
| 157/271 Test #26: TestReferenceLocalEnergyMinimizer .............. Passed 1.28 sec | |
| Start 169: TestCpuCustomNonbondedForce | |
| 158/271 Test #27: TestReferenceMonteCarloAnisotropicBarostat ..... Passed 1.28 sec | |
| Start 170: TestCpuDispersionPME | |
| 159/271 Test #40: TestReferenceVerletIntegrator .................. Passed 0.46 sec | |
| Start 171: TestCpuEwald | |
| 160/271 Test #165: TestCpuCheckpoints ............................. Passed 0.32 sec | |
| Start 172: TestCpuGBSAOBCForce | |
| 161/271 Test #167: TestCpuCustomGBForce ........................... Passed 0.76 sec | |
| Start 173: TestCpuGayBerneForce | |
| 162/271 Test #172: TestCpuGBSAOBCForce ............................ Passed 0.79 sec | |
| Start 174: TestCpuHarmonicAngleForce | |
| 163/271 Test #174: TestCpuHarmonicAngleForce ...................... Passed 0.03 sec | |
| Start 175: TestCpuLangevinMiddleIntegrator | |
| 164/271 Test #18: TestReferenceDispersionPME ..................... Passed 2.51 sec | |
| Start 176: TestCpuNeighborList | |
| 165/271 Test #176: TestCpuNeighborList ............................ Passed 0.11 sec | |
| Start 177: TestCpuNonbondedForce | |
| 166/271 Test #173: TestCpuGayBerneForce ........................... Passed 1.02 sec | |
| Start 178: TestCpuPeriodicTorsionForce | |
| 167/271 Test #178: TestCpuPeriodicTorsionForce .................... Passed 0.03 sec | |
| Start 179: TestCpuRBTorsionForce | |
| 168/271 Test #179: TestCpuRBTorsionForce .......................... Passed 0.04 sec | |
| Start 180: TestCpuSettle | |
| 169/271 Test #171: TestCpuEwald ................................... Passed 1.75 sec | |
| Start 181: TestReferenceAmoebaExtrapolatedPolarization | |
| 170/271 Test #33: TestReferenceNoseHooverIntegrator .............. Passed 2.83 sec | |
| Start 182: TestReferenceAmoebaGeneralizedKirkwoodForce | |
| 171/271 Test #181: TestReferenceAmoebaExtrapolatedPolarization .... Passed 0.71 sec | |
| Start 183: TestReferenceAmoebaMultipoleForce | |
| 172/271 Test #39: TestReferenceVariableVerletIntegrator .......... Passed 3.34 sec | |
| Start 184: TestReferenceAmoebaTorsionTorsionForce | |
| 173/271 Test #184: TestReferenceAmoebaTorsionTorsionForce ......... Passed 0.01 sec | |
| Start 185: TestReferenceAmoebaVdwForce | |
| 174/271 Test #170: TestCpuDispersionPME ........................... Passed 2.95 sec | |
| Start 186: TestReferenceHippoNonbondedForce | |
| 175/271 Test #185: TestReferenceAmoebaVdwForce .................... Passed 0.10 sec | |
| Start 187: TestReferenceWcaDispersionForce | |
| 176/271 Test #187: TestReferenceWcaDispersionForce ................ Passed 0.00 sec | |
| Start 188: TestCudaAmoebaExtrapolatedPolarizationSingle | |
| 177/271 Test #188: TestCudaAmoebaExtrapolatedPolarizationSingle ...***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaExtrapolatedPolarization: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 189: TestCudaAmoebaExtrapolatedPolarizationMixed | |
| 178/271 Test #189: TestCudaAmoebaExtrapolatedPolarizationMixed ....***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaExtrapolatedPolarization: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 190: TestCudaAmoebaExtrapolatedPolarizationDouble | |
| 179/271 Test #190: TestCudaAmoebaExtrapolatedPolarizationDouble ...***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaExtrapolatedPolarization: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 191: TestCudaAmoebaGeneralizedKirkwoodForceSingle | |
| 180/271 Test #191: TestCudaAmoebaGeneralizedKirkwoodForceSingle ...***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaGeneralizedKirkwoodForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 192: TestCudaAmoebaGeneralizedKirkwoodForceMixed | |
| 181/271 Test #192: TestCudaAmoebaGeneralizedKirkwoodForceMixed ....***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaGeneralizedKirkwoodForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 193: TestCudaAmoebaGeneralizedKirkwoodForceDouble | |
| 182/271 Test #193: TestCudaAmoebaGeneralizedKirkwoodForceDouble ...***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaGeneralizedKirkwoodForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 194: TestCudaAmoebaMultipoleForceSingle | |
| 183/271 Test #194: TestCudaAmoebaMultipoleForceSingle .............***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaMultipoleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 195: TestCudaAmoebaMultipoleForceMixed | |
| 184/271 Test #195: TestCudaAmoebaMultipoleForceMixed ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaMultipoleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 196: TestCudaAmoebaMultipoleForceDouble | |
| 185/271 Test #196: TestCudaAmoebaMultipoleForceDouble .............***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaMultipoleForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 197: TestCudaAmoebaTorsionTorsionForceSingle | |
| 186/271 Test #197: TestCudaAmoebaTorsionTorsionForceSingle ........***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaTorsionTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 198: TestCudaAmoebaTorsionTorsionForceMixed | |
| 187/271 Test #198: TestCudaAmoebaTorsionTorsionForceMixed .........***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaTorsionTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 199: TestCudaAmoebaTorsionTorsionForceDouble | |
| 188/271 Test #199: TestCudaAmoebaTorsionTorsionForceDouble ........***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaTorsionTorsionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 200: TestCudaAmoebaVdwForceSingle | |
| 189/271 Test #200: TestCudaAmoebaVdwForceSingle ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaVdwForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 201: TestCudaAmoebaVdwForceMixed | |
| 190/271 Test #201: TestCudaAmoebaVdwForceMixed ....................***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaVdwForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 202: TestCudaAmoebaVdwForceDouble | |
| 191/271 Test #202: TestCudaAmoebaVdwForceDouble ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaAmoebaVdwForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 203: TestCudaHippoNonbondedForceSingle | |
| 192/271 Test #203: TestCudaHippoNonbondedForceSingle ..............***Failed 0.01 sec | |
| /build/source/build/TestCudaHippoNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 204: TestCudaHippoNonbondedForceMixed | |
| 193/271 Test #204: TestCudaHippoNonbondedForceMixed ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaHippoNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 205: TestCudaHippoNonbondedForceDouble | |
| 194/271 Test #205: TestCudaHippoNonbondedForceDouble ..............***Failed 0.00 sec | |
| /build/source/build/TestCudaHippoNonbondedForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 206: TestCudaWcaDispersionForceSingle | |
| 195/271 Test #206: TestCudaWcaDispersionForceSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaWcaDispersionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 207: TestCudaWcaDispersionForceMixed | |
| 196/271 Test #207: TestCudaWcaDispersionForceMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaWcaDispersionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 208: TestCudaWcaDispersionForceDouble | |
| 197/271 Test #208: TestCudaWcaDispersionForceDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaWcaDispersionForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 209: TestReferenceRpmd | |
| 198/271 Test #186: TestReferenceHippoNonbondedForce ............... Passed 0.52 sec | |
| Start 210: TestCudaRpmdSingle | |
| 199/271 Test #210: TestCudaRpmdSingle .............................***Failed 0.00 sec | |
| /build/source/build/TestCudaRpmd: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 211: TestCudaRpmdMixed | |
| 200/271 Test #211: TestCudaRpmdMixed ..............................***Failed 0.00 sec | |
| /build/source/build/TestCudaRpmd: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 212: TestCudaRpmdDouble | |
| 201/271 Test #212: TestCudaRpmdDouble .............................***Failed 0.00 sec | |
| /build/source/build/TestCudaRpmd: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 213: TestReferenceDrudeForce | |
| 202/271 Test #213: TestReferenceDrudeForce ........................ Passed 0.01 sec | |
| Start 214: TestReferenceDrudeLangevinIntegrator | |
| 203/271 Test #183: TestReferenceAmoebaMultipoleForce .............. Passed 1.05 sec | |
| Start 215: TestReferenceDrudeNoseHoover | |
| 204/271 Test #182: TestReferenceAmoebaGeneralizedKirkwoodForce .... Passed 4.66 sec | |
| Start 216: TestReferenceDrudeSCFIntegrator | |
| 205/271 Test #180: TestCpuSettle .................................. Passed 4.96 sec | |
| Start 217: TestCudaDrudeForceSingle | |
| 206/271 Test #217: TestCudaDrudeForceSingle .......................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 218: TestCudaDrudeForceMixed | |
| 207/271 Test #218: TestCudaDrudeForceMixed ........................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 219: TestCudaDrudeForceDouble | |
| 208/271 Test #219: TestCudaDrudeForceDouble .......................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeForce: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 220: TestCudaDrudeLangevinIntegratorSingle | |
| 209/271 Test #220: TestCudaDrudeLangevinIntegratorSingle ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeLangevinIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 221: TestCudaDrudeLangevinIntegratorMixed | |
| 210/271 Test #221: TestCudaDrudeLangevinIntegratorMixed ...........***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeLangevinIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 222: TestCudaDrudeLangevinIntegratorDouble | |
| 211/271 Test #222: TestCudaDrudeLangevinIntegratorDouble ..........***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeLangevinIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 223: TestCudaDrudeNoseHooverSingle | |
| 212/271 Test #223: TestCudaDrudeNoseHooverSingle ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeNoseHoover: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 224: TestCudaDrudeNoseHooverMixed | |
| 213/271 Test #224: TestCudaDrudeNoseHooverMixed ...................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeNoseHoover: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 225: TestCudaDrudeNoseHooverDouble | |
| 214/271 Test #225: TestCudaDrudeNoseHooverDouble ..................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeNoseHoover: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 226: TestCudaDrudeSCFIntegratorSingle | |
| 215/271 Test #226: TestCudaDrudeSCFIntegratorSingle ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeSCFIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 227: TestCudaDrudeSCFIntegratorMixed | |
| 216/271 Test #227: TestCudaDrudeSCFIntegratorMixed ................***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeSCFIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 228: TestCudaDrudeSCFIntegratorDouble | |
| 217/271 Test #228: TestCudaDrudeSCFIntegratorDouble ...............***Failed 0.00 sec | |
| /build/source/build/TestCudaDrudeSCFIntegrator: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 229: TestCpuPme | |
| 218/271 Test #215: TestReferenceDrudeNoseHoover ................... Passed 4.05 sec | |
| Start 230: TestCudaCompiler | |
| 219/271 Test #230: TestCudaCompiler ...............................***Failed 0.00 sec | |
| /build/source/build/TestCudaCompiler: error while loading shared libraries: libcuda.so.1: cannot open shared object file: No such file or directory | |
| Start 231: TestSerializationNode | |
| 220/271 Test #231: TestSerializationNode .......................... Passed 0.00 sec | |
| Start 232: TestSerializeAndersenThermostat | |
| 221/271 Test #232: TestSerializeAndersenThermostat ................ Passed 0.01 sec | |
| Start 233: TestSerializeCMAPTorsion | |
| 222/271 Test #233: TestSerializeCMAPTorsion ....................... Passed 0.00 sec | |
| Start 234: TestSerializeCMMotionRemover | |
| 223/271 Test #234: TestSerializeCMMotionRemover ................... Passed 0.00 sec | |
| Start 235: TestSerializeCustomAngleForce | |
| 224/271 Test #235: TestSerializeCustomAngleForce .................. Passed 0.00 sec | |
| Start 236: TestSerializeCustomBondForce | |
| 225/271 Test #236: TestSerializeCustomBondForce ................... Passed 0.00 sec | |
| Start 237: TestSerializeCustomCVForce | |
| 226/271 Test #237: TestSerializeCustomCVForce ..................... Passed 0.00 sec | |
| Start 238: TestSerializeCustomCentroidBondForce | |
| 227/271 Test #238: TestSerializeCustomCentroidBondForce ........... Passed 0.00 sec | |
| Start 239: TestSerializeCustomCompoundBondForce | |
| 228/271 Test #239: TestSerializeCustomCompoundBondForce ........... Passed 0.00 sec | |
| Start 240: TestSerializeCustomExternalForce | |
| 229/271 Test #240: TestSerializeCustomExternalForce ............... Passed 0.00 sec | |
| Start 241: TestSerializeCustomGBForce | |
| 230/271 Test #241: TestSerializeCustomGBForce ..................... Passed 0.00 sec | |
| Start 242: TestSerializeCustomHbondForce | |
| 231/271 Test #242: TestSerializeCustomHbondForce .................. Passed 0.00 sec | |
| Start 243: TestSerializeCustomManyParticleForce | |
| 232/271 Test #243: TestSerializeCustomManyParticleForce ........... Passed 0.01 sec | |
| Start 244: TestSerializeCustomNonbondedForce | |
| 233/271 Test #244: TestSerializeCustomNonbondedForce .............. Passed 0.00 sec | |
| Start 245: TestSerializeCustomTorsionForce | |
| 234/271 Test #245: TestSerializeCustomTorsionForce ................ Passed 0.00 sec | |
| Start 246: TestSerializeGBSAOBCForce | |
| 235/271 Test #246: TestSerializeGBSAOBCForce ...................... Passed 0.00 sec | |
| Start 247: TestSerializeGayBerneForce | |
| 236/271 Test #247: TestSerializeGayBerneForce ..................... Passed 0.00 sec | |
| Start 248: TestSerializeHarmonicAngleForce | |
| 237/271 Test #248: TestSerializeHarmonicAngleForce ................ Passed 0.01 sec | |
| Start 249: TestSerializeHarmonicBondForce | |
| 238/271 Test #249: TestSerializeHarmonicBondForce ................. Passed 0.00 sec | |
| Start 250: TestSerializeMonteCarloAnisotropicBarostat | |
| 239/271 Test #250: TestSerializeMonteCarloAnisotropicBarostat ..... Passed 0.00 sec | |
| Start 251: TestSerializeMonteCarloBarostat | |
| 240/271 Test #251: TestSerializeMonteCarloBarostat ................ Passed 0.00 sec | |
| Start 252: TestSerializeMonteCarloFlexibleBarostat | |
| 241/271 Test #252: TestSerializeMonteCarloFlexibleBarostat ........ Passed 0.01 sec | |
| Start 253: TestSerializeMonteCarloMembraneBarostat | |
| 242/271 Test #253: TestSerializeMonteCarloMembraneBarostat ........ Passed 0.00 sec | |
| Start 254: TestSerializeNonbondedForce | |
| 243/271 Test #254: TestSerializeNonbondedForce .................... Passed 0.00 sec | |
| Start 255: TestSerializeNoseHooverIntegrator | |
| 244/271 Test #255: TestSerializeNoseHooverIntegrator .............. Passed 0.00 sec | |
| Start 256: TestSerializePeriodicTorsionForce | |
| 245/271 Test #256: TestSerializePeriodicTorsionForce .............. Passed 0.00 sec | |
| Start 257: TestSerializeRBTorsionForce | |
| 246/271 Test #257: TestSerializeRBTorsionForce .................... Passed 0.00 sec | |
| Start 258: TestSerializeRMSDForce | |
| 247/271 Test #258: TestSerializeRMSDForce ......................... Passed 0.00 sec | |
| Start 259: TestSerializeState | |
| 248/271 Test #259: TestSerializeState ............................. Passed 0.01 sec | |
| Start 260: TestSerializeSystem | |
| 249/271 Test #260: TestSerializeSystem ............................ Passed 0.00 sec | |
| Start 261: TestSerializeTabulatedFunctions | |
| 250/271 Test #261: TestSerializeTabulatedFunctions ................ Passed 0.00 sec | |
| Start 262: TestEnforcePeriodicBox | |
| 251/271 Test #262: TestEnforcePeriodicBox ......................... Passed 0.01 sec | |
| Start 263: TestFindExclusions | |
| 252/271 Test #263: TestFindExclusions ............................. Passed 0.00 sec | |
| Start 264: TestFindMolecules | |
| 253/271 Test #264: TestFindMolecules .............................. Passed 0.01 sec | |
| Start 265: TestParser | |
| 254/271 Test #265: TestParser ..................................... Passed 0.01 sec | |
| Start 266: TestSplineFitter | |
| 255/271 Test #266: TestSplineFitter ............................... Passed 0.01 sec | |
| Start 267: TestSystem | |
| 256/271 Test #267: TestSystem ..................................... Passed 0.00 sec | |
| Start 268: TestVectorExpression | |
| 257/271 Test #268: TestVectorExpression ........................... Passed 0.00 sec | |
| Start 269: TestVectorize | |
| 258/271 Test #269: TestVectorize .................................. Passed 0.00 sec | |
| Start 270: TestVectorizeAvx | |
| 259/271 Test #270: TestVectorizeAvx ............................... Passed 0.00 sec | |
| Start 271: TestVectorizeAvx2 | |
| 260/271 Test #271: TestVectorizeAvx2 .............................. Passed 0.00 sec | |
| 261/271 Test #229: TestCpuPme ..................................... Passed 4.55 sec | |
| 262/271 Test #169: TestCpuCustomNonbondedForce .................... Passed 11.58 sec | |
| 263/271 Test #177: TestCpuNonbondedForce .......................... Passed 11.71 sec | |
| 264/271 Test #214: TestReferenceDrudeLangevinIntegrator ........... Passed 9.98 sec | |
| 265/271 Test #216: TestReferenceDrudeSCFIntegrator ................ Passed 8.83 sec | |
| 266/271 Test #209: TestReferenceRpmd .............................. Passed 18.93 sec | |
| 267/271 Test #15: TestReferenceCustomManyParticleForce ........... Passed 23.73 sec | |
| 268/271 Test #16: TestReferenceCustomNonbondedForce .............. Passed 30.02 sec | |
| 269/271 Test #166: TestCpuCompoundIntegrator ...................... Passed 29.65 sec | |
| 270/271 Test #168: TestCpuCustomManyParticleForce ................. Passed 30.30 sec | |
| 271/271 Test #175: TestCpuLangevinMiddleIntegrator ................ Passed 42.86 sec | |
| 41% tests passed, 160 tests failed out of 271 | |
| Total Test time (real) = 45.18 sec | |
| The following tests FAILED: | |
| 42 - TestCudaAndersenThermostatSingle (Failed) | |
| 43 - TestCudaAndersenThermostatMixed (Failed) | |
| 44 - TestCudaAndersenThermostatDouble (Failed) | |
| 45 - TestCudaCMAPTorsionForceSingle (Failed) | |
| 46 - TestCudaCMAPTorsionForceMixed (Failed) | |
| 47 - TestCudaCMAPTorsionForceDouble (Failed) | |
| 48 - TestCudaCMMotionRemoverSingle (Failed) | |
| 49 - TestCudaCMMotionRemoverMixed (Failed) | |
| 50 - TestCudaCMMotionRemoverDouble (Failed) | |
| 51 - TestCudaCheckpointsSingle (Failed) | |
| 52 - TestCudaCheckpointsMixed (Failed) | |
| 53 - TestCudaCheckpointsDouble (Failed) | |
| 54 - TestCudaCompoundIntegratorSingle (Failed) | |
| 55 - TestCudaCompoundIntegratorMixed (Failed) | |
| 56 - TestCudaCompoundIntegratorDouble (Failed) | |
| 57 - TestCudaCustomAngleForceSingle (Failed) | |
| 58 - TestCudaCustomAngleForceMixed (Failed) | |
| 59 - TestCudaCustomAngleForceDouble (Failed) | |
| 60 - TestCudaCustomBondForceSingle (Failed) | |
| 61 - TestCudaCustomBondForceMixed (Failed) | |
| 62 - TestCudaCustomBondForceDouble (Failed) | |
| 63 - TestCudaCustomCVForceSingle (Failed) | |
| 64 - TestCudaCustomCVForceMixed (Failed) | |
| 65 - TestCudaCustomCVForceDouble (Failed) | |
| 66 - TestCudaCustomCentroidBondForceSingle (Failed) | |
| 67 - TestCudaCustomCentroidBondForceMixed (Failed) | |
| 68 - TestCudaCustomCentroidBondForceDouble (Failed) | |
| 69 - TestCudaCustomCompoundBondForceSingle (Failed) | |
| 70 - TestCudaCustomCompoundBondForceMixed (Failed) | |
| 71 - TestCudaCustomCompoundBondForceDouble (Failed) | |
| 72 - TestCudaCustomExternalForceSingle (Failed) | |
| 73 - TestCudaCustomExternalForceMixed (Failed) | |
| 74 - TestCudaCustomExternalForceDouble (Failed) | |
| 75 - TestCudaCustomGBForceSingle (Failed) | |
| 76 - TestCudaCustomGBForceMixed (Failed) | |
| 77 - TestCudaCustomGBForceDouble (Failed) | |
| 78 - TestCudaCustomHbondForceSingle (Failed) | |
| 79 - TestCudaCustomHbondForceMixed (Failed) | |
| 80 - TestCudaCustomHbondForceDouble (Failed) | |
| 81 - TestCudaCustomIntegratorSingle (Failed) | |
| 82 - TestCudaCustomIntegratorMixed (Failed) | |
| 83 - TestCudaCustomIntegratorDouble (Failed) | |
| 84 - TestCudaCustomManyParticleForceSingle (Failed) | |
| 85 - TestCudaCustomManyParticleForceMixed (Failed) | |
| 86 - TestCudaCustomManyParticleForceDouble (Failed) | |
| 87 - TestCudaCustomNonbondedForceSingle (Failed) | |
| 88 - TestCudaCustomNonbondedForceMixed (Failed) | |
| 89 - TestCudaCustomNonbondedForceDouble (Failed) | |
| 90 - TestCudaCustomTorsionForceSingle (Failed) | |
| 91 - TestCudaCustomTorsionForceMixed (Failed) | |
| 92 - TestCudaCustomTorsionForceDouble (Failed) | |
| 93 - TestCudaDispersionPMESingle (Failed) | |
| 94 - TestCudaDispersionPMEMixed (Failed) | |
| 95 - TestCudaDispersionPMEDouble (Failed) | |
| 96 - TestCudaEwaldSingle (Failed) | |
| 97 - TestCudaEwaldMixed (Failed) | |
| 98 - TestCudaEwaldDouble (Failed) | |
| 99 - TestCudaFFT3DSingle (Failed) | |
| 100 - TestCudaFFT3DMixed (Failed) | |
| 101 - TestCudaFFT3DDouble (Failed) | |
| 102 - TestCudaGBSAOBCForceSingle (Failed) | |
| 103 - TestCudaGBSAOBCForceMixed (Failed) | |
| 104 - TestCudaGBSAOBCForceDouble (Failed) | |
| 105 - TestCudaGayBerneForceSingle (Failed) | |
| 106 - TestCudaGayBerneForceMixed (Failed) | |
| 107 - TestCudaGayBerneForceDouble (Failed) | |
| 108 - TestCudaHarmonicAngleForceSingle (Failed) | |
| 109 - TestCudaHarmonicAngleForceMixed (Failed) | |
| 110 - TestCudaHarmonicAngleForceDouble (Failed) | |
| 111 - TestCudaHarmonicBondForceSingle (Failed) | |
| 112 - TestCudaHarmonicBondForceMixed (Failed) | |
| 113 - TestCudaHarmonicBondForceDouble (Failed) | |
| 114 - TestCudaLangevinMiddleIntegratorSingle (Failed) | |
| 115 - TestCudaLangevinMiddleIntegratorMixed (Failed) | |
| 116 - TestCudaLangevinMiddleIntegratorDouble (Failed) | |
| 117 - TestCudaLocalEnergyMinimizerSingle (Failed) | |
| 118 - TestCudaLocalEnergyMinimizerMixed (Failed) | |
| 119 - TestCudaLocalEnergyMinimizerDouble (Failed) | |
| 120 - TestCudaMonteCarloAnisotropicBarostatSingle (Failed) | |
| 121 - TestCudaMonteCarloAnisotropicBarostatMixed (Failed) | |
| 122 - TestCudaMonteCarloAnisotropicBarostatDouble (Failed) | |
| 123 - TestCudaMonteCarloBarostatSingle (Failed) | |
| 124 - TestCudaMonteCarloBarostatMixed (Failed) | |
| 125 - TestCudaMonteCarloBarostatDouble (Failed) | |
| 126 - TestCudaMonteCarloFlexibleBarostatSingle (Failed) | |
| 127 - TestCudaMonteCarloFlexibleBarostatMixed (Failed) | |
| 128 - TestCudaMonteCarloFlexibleBarostatDouble (Failed) | |
| 129 - TestCudaMultipleForcesSingle (Failed) | |
| 130 - TestCudaMultipleForcesMixed (Failed) | |
| 131 - TestCudaMultipleForcesDouble (Failed) | |
| 132 - TestCudaNonbondedForceSingle (Failed) | |
| 133 - TestCudaNonbondedForceMixed (Failed) | |
| 134 - TestCudaNonbondedForceDouble (Failed) | |
| 135 - TestCudaNoseHooverIntegratorSingle (Failed) | |
| 136 - TestCudaNoseHooverIntegratorMixed (Failed) | |
| 137 - TestCudaNoseHooverIntegratorDouble (Failed) | |
| 138 - TestCudaPeriodicTorsionForceSingle (Failed) | |
| 139 - TestCudaPeriodicTorsionForceMixed (Failed) | |
| 140 - TestCudaPeriodicTorsionForceDouble (Failed) | |
| 141 - TestCudaRBTorsionForceSingle (Failed) | |
| 142 - TestCudaRBTorsionForceMixed (Failed) | |
| 143 - TestCudaRBTorsionForceDouble (Failed) | |
| 144 - TestCudaRMSDForceSingle (Failed) | |
| 145 - TestCudaRMSDForceMixed (Failed) | |
| 146 - TestCudaRMSDForceDouble (Failed) | |
| 147 - TestCudaRandomSingle (Failed) | |
| 148 - TestCudaRandomMixed (Failed) | |
| 149 - TestCudaRandomDouble (Failed) | |
| 150 - TestCudaSettleSingle (Failed) | |
| 151 - TestCudaSettleMixed (Failed) | |
| 152 - TestCudaSettleDouble (Failed) | |
| 153 - TestCudaSortSingle (Failed) | |
| 154 - TestCudaSortMixed (Failed) | |
| 155 - TestCudaSortDouble (Failed) | |
| 156 - TestCudaVariableVerletIntegratorSingle (Failed) | |
| 157 - TestCudaVariableVerletIntegratorMixed (Failed) | |
| 158 - TestCudaVariableVerletIntegratorDouble (Failed) | |
| 159 - TestCudaVerletIntegratorSingle (Failed) | |
| 160 - TestCudaVerletIntegratorMixed (Failed) | |
| 161 - TestCudaVerletIntegratorDouble (Failed) | |
| 162 - TestCudaVirtualSitesSingle (Failed) | |
| 163 - TestCudaVirtualSitesMixed (Failed) | |
| 164 - TestCudaVirtualSitesDouble (Failed) | |
| 188 - TestCudaAmoebaExtrapolatedPolarizationSingle (Failed) | |
| 189 - TestCudaAmoebaExtrapolatedPolarizationMixed (Failed) | |
| 190 - TestCudaAmoebaExtrapolatedPolarizationDouble (Failed) | |
| 191 - TestCudaAmoebaGeneralizedKirkwoodForceSingle (Failed) | |
| 192 - TestCudaAmoebaGeneralizedKirkwoodForceMixed (Failed) | |
| 193 - TestCudaAmoebaGeneralizedKirkwoodForceDouble (Failed) | |
| 194 - TestCudaAmoebaMultipoleForceSingle (Failed) | |
| 195 - TestCudaAmoebaMultipoleForceMixed (Failed) | |
| 196 - TestCudaAmoebaMultipoleForceDouble (Failed) | |
| 197 - TestCudaAmoebaTorsionTorsionForceSingle (Failed) | |
| 198 - TestCudaAmoebaTorsionTorsionForceMixed (Failed) | |
| 199 - TestCudaAmoebaTorsionTorsionForceDouble (Failed) | |
| 200 - TestCudaAmoebaVdwForceSingle (Failed) | |
| 201 - TestCudaAmoebaVdwForceMixed (Failed) | |
| 202 - TestCudaAmoebaVdwForceDouble (Failed) | |
| 203 - TestCudaHippoNonbondedForceSingle (Failed) | |
| 204 - TestCudaHippoNonbondedForceMixed (Failed) | |
| 205 - TestCudaHippoNonbondedForceDouble (Failed) | |
| 206 - TestCudaWcaDispersionForceSingle (Failed) | |
| 207 - TestCudaWcaDispersionForceMixed (Failed) | |
| 208 - TestCudaWcaDispersionForceDouble (Failed) | |
| 210 - TestCudaRpmdSingle (Failed) | |
| 211 - TestCudaRpmdMixed (Failed) | |
| 212 - TestCudaRpmdDouble (Failed) | |
| 217 - TestCudaDrudeForceSingle (Failed) | |
| 218 - TestCudaDrudeForceMixed (Failed) | |
| 219 - TestCudaDrudeForceDouble (Failed) | |
| 220 - TestCudaDrudeLangevinIntegratorSingle (Failed) | |
| 221 - TestCudaDrudeLangevinIntegratorMixed (Failed) | |
| 222 - TestCudaDrudeLangevinIntegratorDouble (Failed) | |
| 223 - TestCudaDrudeNoseHooverSingle (Failed) | |
| 224 - TestCudaDrudeNoseHooverMixed (Failed) | |
| 225 - TestCudaDrudeNoseHooverDouble (Failed) | |
| 226 - TestCudaDrudeSCFIntegratorSingle (Failed) | |
| 227 - TestCudaDrudeSCFIntegratorMixed (Failed) | |
| 228 - TestCudaDrudeSCFIntegratorDouble (Failed) | |
| 230 - TestCudaCompiler (Failed) | |
| Errors while running CTest | |
| make: *** [Makefile:71: test] Error 8 | |
| error: builder for '/nix/store/ws0fgn9a6iihg9vay7sw8c5g7hmh6all-openmm-7.7.0.drv' failed with exit code 2; | |
| last 10 log lines: | |
| > 222 - TestCudaDrudeLangevinIntegratorDouble (Failed) | |
| > 223 - TestCudaDrudeNoseHooverSingle (Failed) | |
| > 224 - TestCudaDrudeNoseHooverMixed (Failed) | |
| > 225 - TestCudaDrudeNoseHooverDouble (Failed) | |
| > 226 - TestCudaDrudeSCFIntegratorSingle (Failed) | |
| > 227 - TestCudaDrudeSCFIntegratorMixed (Failed) | |
| > 228 - TestCudaDrudeSCFIntegratorDouble (Failed) | |
| > 230 - TestCudaCompiler (Failed) | |
| > Errors while running CTest | |
| > make: *** [Makefile:71: test] Error 8 | |
| For full logs, run 'nix log /nix/store/ws0fgn9a6iihg9vay7sw8c5g7hmh6all-openmm-7.7.0.drv'. |
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