Martin Skarzynski marskar

👨‍💻

Per aspera💪ad astra✨

🧮Biostatistics Branch🏛NCI Division of🦀Cancer Epidemiology and🧬Genetics (DCEG) 💻Bioinformatics📊DataScience💺Co-chair🎓FAES 🐍Python®Rstats⚕Health🤖ML🧠AI

marskar / ProgrammaticNotebook.ipynb

Created September 16, 2017 16:01 — forked from fperez/ProgrammaticNotebook.ipynb

Creating an IPython Notebook programatically

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marskar / app.R

Last active December 27, 2021 05:36

Shiny Old Faithful Geyser example with magrittr pipes

	#
	# This is a Shiny web application. You can run the application by clicking
	# the 'Run App' button above.
	#
	# Find out more about building applications with Shiny here:
	#
	# http://shiny.rstudio.com/
	#

	library(shiny)

marskar / pydy.py

Last active September 27, 2018 04:01

	from importlib import import_module


	def pydy(cls, src: str = 'helper'):

	class Pydy(cls):
	pass

	mod = import_module(src)
	internals = mod.__dict__.items()

marskar / setup.R

Last active September 7, 2021 01:41

Create an R package using this script.

	#' ---
	#' title: "How to set up a project - R script"
	#' author: "Martin Skarzynki"
	#' date: "`r Sys.Date()`"
	#' output:
	#' html_document:
	#' keep_md: true
	#' ---
	#'
	#' # Step 1: Create a package/project

marskar / pytest_ini.sh

Created December 9, 2018 18:21

Create a pytest.ini file

echo "[pytest]\naddopts = --mypy --mypy-ignore-missing-imports --doctest-modules" > pytest.ini

marskar / auto_commit.py

Last active April 21, 2019 14:20

A super lazy commit

	import git

	repo = git.Repo()

	untracked = repo.untracked_files

	changed_file_lists = [
	[file.a_path
	for file in repo.index.diff(None).iter_change_type(change_type)]
	for change_type in list('DMR')

marskar / commit.py

Last active April 21, 2019 14:49

The ultimate lazy commit!

	import git

	repo = git.Repo()

	untracked = repo.untracked_files

	changed_file_lists = [
	[file.a_path
	for file in repo.index.diff(None).iter_change_type(change_type)]
	for change_type in ('D', 'M')

marskar / acmp.py

Last active April 21, 2019 15:02

ACMP stands for git add && git commit --message && git push

	import git

	repo = git.Repo()

	untracked = repo.untracked_files

	changed_file_lists = [
	[file.a_path
	for file in repo.index.diff(None).iter_change_type(change_type)]
	for change_type in ('D', 'M')

marskar / camp.py

Last active April 5, 2023 19:07

CAMP stands for git commit --add --message && git push

	import git

	repo = git.Repo()

	changed_file_lists = [
	[file.a_path
	for file in repo.index.diff(None).iter_change_type(change_type)]
	for change_type in ('D', 'M')
	]

marskar / acm.py

Created April 21, 2019 15:00

ACM stands for git add && git commit --message

	import git

	repo = git.Repo()

	untracked = repo.untracked_files

	changed_file_lists = [
	[file.a_path
	for file in repo.index.diff(None).iter_change_type(change_type)]
	for change_type in ('D', 'M')