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FROM openeuler/openeuler:22.03-lts-sp4 | |
RUN dnf update -y && dnf install -y gperftools-libs git wget | |
RUN adduser kleidiai | |
USER kleidiai | |
WORKDIR /home/kleidiai |
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CREATE OR REPLACE TABLE stats AS | |
SELECT * FROM read_csv('./packages.tsv', | |
delim = '\t', | |
header = true, | |
columns = { | |
'package': 'VARCHAR', | |
'total': 'INTEGER' | |
}) | |
WHERE package NOT LIKE 'bioconductor-%' | |
AND package NOT LIKE 'perl-%' |
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#!/usr/bin/env bash | |
# set -x | |
RECIPES_PATH=${1:-recipes} | |
AARCH64_STATUS_FILE="/home/martin/git/bioconda/bioconda-stats/package-downloads/anaconda.org/bioconda/aarch64-status.tsv" | |
rm -f ${AARCH64_STATUS_FILE} | |
echo -e "package\thas-aarch64\tnoarch" > ${AARCH64_STATUS_FILE} |
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apiVersion: scheduling.volcano.sh/v1beta1 | |
kind: PodGroup | |
spec: | |
minMember: 1 | |
minResources: | |
cpu: "5" | |
memory: "7Gi" | |
priorityClassName: medium | |
queue: my-queue |
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#!/usr/bin/env bash | |
K8S_NAMESPACE="spark-on-k8s" | |
K8S_SERVICE_ACCOUNT_NAME="spark-account-name" | |
K8S_CLUSTER_ROLE="spark-on-k8s-cluster-role" | |
CURRENT_CONTEXT=(kubectl config view -o jsonpath="{.current-context}") | |
K8S_MASTER=$(kubectl config view -o jsonpath="{.clusters[?(@.name==\"$CURRENT_CONTEXT\")].cluster.server}") |
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apiVersion: scheduling.volcano.sh/v1beta1 | |
kind: Queue | |
metadata: | |
name: my-queue | |
spec: | |
weight: 1 | |
capability: | |
cpu: "6" | |
memory: "8096Mi" |
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apiVersion: scheduling.k8s.io/v1 | |
kind: PriorityClass | |
metadata: | |
name: high | |
value: 100 | |
--- | |
apiVersion: scheduling.k8s.io/v1 | |
kind: PriorityClass | |
metadata: | |
name: medium |
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#!/usr/bin/env bash | |
DRIVER_CORES=1 | |
DRIVER_MEM=2048m | |
EXECUTOR_INSTANCES=3 | |
EXECUTOR_CORES=2 | |
EXECUTOR_MEM=2048m | |
SPARK_HOME="/path/to/spark-3.3.0-SNAPSHOT-bin-with-volcano" # CHANGE 1 | |
PATH="$JAVA_8_HOME/bin:$SPARK_HOME/bin:$PATH" |
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#!/usr/bin/env bash | |
BASE_OS="openeuler/openeuler:20.03-lts-sp3" | |
SPARK_VERSION="3.3.0-SNAPSHOT" | |
SCALA_VERSION="scala_2.12" | |
DOCKERIMAGETAG="11-jre-slim" | |
cd $SPARK_HOME | |
./bin/docker-image-tool.sh \ | |
-t ${SPARK_VERSION}-${SCALA_VERSION}-${DOCKERIMAGETAG} \ |
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