perl makeHelpWebsite.pl failure

$ perl makeHelpWebsite.pl 
Features subdir found: features
Plugins subdir found: plugins
cp: plugins/net.bioclipse/*.css: No such file or directory
Finding features... found: 18
  feature: net.bioclipse.cdk_feature
    plugin: net.bioclipse.cdk.debug
  feature: net.bioclipse.chemoinformatics_feature
    plugin: net.bioclipse.cdk.business
    plugin: net.bioclipse.cdk.ui
    plugin: net.bioclipse.jmol
    plugin: org.openscience.cdk.atomtype
    plugin: org.openscience.cdk.builder3d
    plugin: org.openscience.cdk.charges
    plugin: org.openscience.cdk.control
    plugin: org.openscience.cdk.core
    plugin: org.openscience.cdk.data
    plugin: org.openscience.cdk.datadebug
    plugin: org.openscience.cdk.dict
    plugin: org.openscience.cdk.diff
    plugin: org.openscience.cdk.extra
    plugin: org.openscience.cdk.fingerprint
    plugin: org.openscience.cdk.forcefield
    plugin: org.openscience.cdk.formula
    plugin: org.openscience.cdk.inchi
    plugin: org.openscience.cdk.interfaces
    plugin: org.openscience.cdk.io
    plugin: org.openscience.cdk.ionpot
    plugin: org.openscience.cdk.isomorphism
    plugin: org.openscience.cdk.libiocml
    plugin: org.openscience.cdk.libiomd
    plugin: org.openscience.cdk.nonotify
    plugin: org.openscience.cdk.pcore
    plugin: org.openscience.cdk.pdb
    plugin: org.openscience.cdk.pdbcml
    plugin: org.openscience.cdk.qm
    plugin: org.openscience.cdk.qsar
    plugin: org.openscience.cdk.qsaratomic
    plugin: org.openscience.cdk.qsarbond
    plugin: org.openscience.cdk.qsarcml
    plugin: org.openscience.cdk.qsarionpot
    plugin: org.openscience.cdk.qsarmolecular
    plugin: org.openscience.cdk.qsarprotein
    plugin: org.openscience.cdk.reaction
    plugin: org.openscience.cdk.render
    plugin: org.openscience.cdk.sdg
    plugin: org.openscience.cdk.smarts
    plugin: org.openscience.cdk.smiles
    plugin: org.openscience.cdk.standard
    plugin: org.openscience.cdk.structgen
    plugin: org.openscience.cdk.valencycheck
    plugin: net.sf.jniinchi
    plugin: javax.vecmath
    plugin: org.3pq.jgrapht
    plugin: org.jama
    plugin: org.omegahat.sjava
    plugin: org.rosuda.jri
    plugin: org.xmlpull.xpp3
    plugin: net.bioclipse.xom
    plugin: net.bioclipse.cml
    plugin: net.bioclipse.chemoinformatics
    plugin: net.bioclipse.cdk.jchempaint
    plugin: net.bioclipse.cdk.jchempaint.view
    plugin: org.xmlcml.cmlxom
    plugin: net.bioclipse.cdk.ui.sdfeditor
    plugin: org.openscience.cdk.annotation
    plugin: org.openscience.cdk.ioformats
    plugin: org.eclipse.ui.console
    plugin: org.eclipse.core.runtime.compatibility.auth
    plugin: org.eclipse.core.variables
    plugin: net.bioclipse.webservices
    plugin: net.bioclipse.inchi
  feature: net.bioclipse.cml_feature
    plugin: net.bioclipse.cml
    plugin: net.bioclipse.xom
    plugin: org.xmlcml.cmlxom
  feature: net.bioclipse.feature-patch
    plugin: net.bioclipse.core
    plugin: net.bioclipse.logger
    plugin: net.bioclipse.scripting
    plugin: net.bioclipse.scripting.ui
    plugin: net.bioclipse.ui
    plugin: net.bioclipse.ui.business
    plugin: net.bioclipse.xom
    plugin: net.sourceforge.jseditor
  feature: net.bioclipse.jchempaint_feature
    plugin: net.bioclipse.cdk.business
    plugin: net.bioclipse.cdk.ui
    plugin: org.openscience.cdk.atomtype
    plugin: org.openscience.cdk.charges
    plugin: org.openscience.cdk.control
    plugin: org.openscience.cdk.core
    plugin: org.openscience.cdk.data
    plugin: org.openscience.cdk.datadebug
    plugin: org.openscience.cdk.dict
    plugin: org.openscience.cdk.diff
    plugin: org.openscience.cdk.extra
    plugin: org.openscience.cdk.fingerprint
    plugin: org.openscience.cdk.forcefield
    plugin: org.openscience.cdk.formula
    plugin: org.openscience.cdk.inchi
    plugin: org.openscience.cdk.interfaces
    plugin: org.openscience.cdk.io
    plugin: org.openscience.cdk.isomorphism
    plugin: org.openscience.cdk.libiocml
    plugin: org.openscience.cdk.nonotify
    plugin: org.openscience.cdk.reaction
    plugin: org.openscience.cdk.render
    plugin: org.openscience.cdk.sdg
    plugin: org.openscience.cdk.smarts
    plugin: org.openscience.cdk.smiles
    plugin: org.openscience.cdk.standard
    plugin: org.openscience.cdk.structgen
    plugin: org.openscience.cdk.valencycheck
    plugin: net.sf.jniinchi
    plugin: javax.vecmath
    plugin: org.3pq.jgrapht
    plugin: org.jama
    plugin: org.xmlpull.xpp3
    plugin: net.bioclipse.xom
    plugin: net.bioclipse.cml
    plugin: net.bioclipse.cdk.jchempaint
    plugin: net.bioclipse.cdk.debug
    plugin: net.bioclipse.ui
    plugin: net.bioclipse.ui.business
    plugin: net.bioclipse.cdk.jchempaint.view
    plugin: org.openscience.cdk.annotation
  feature: net.bioclipse.jmol_feature
    plugin: net.bioclipse.jmol
    plugin: net.bioclipse.chemoinformatics
  feature: net.bioclipse.molfilter_feature
    plugin: net.bioclipse.cdk.business
    plugin: net.bioclipse.jmol
    plugin: net.bioclipse.molfilter
    plugin: net.bioclipse.molfilter.edit
    plugin: net.bioclipse.molfilter.editor
    plugin: net.bioclipse.molfilter.tests
    plugin: net.bioclipse.pcore
    plugin: net.bioclipse.pcore.edit
    plugin: org.openscience.cdk
  feature: net.bioclipse.qsar_feature
    plugin: net.bioclipse.qsar
    plugin: net.bioclipse.qsar.edit
    plugin: net.bioclipse.qsar.ui
    plugin: org.eclipse.emf
    plugin: org.eclipse.emf.ecore
    plugin: org.eclipse.emf.ecore.edit
    plugin: org.eclipse.emf.ecore.xmi
    plugin: org.eclipse.emf.edit
    plugin: org.eclipse.emf.common
    plugin: net.bioclipse.chart
    plugin: net.bioclipse.statistics
    plugin: net.bioclipse.statistics.jama
  feature: net.bioclipse.rdf_feature
    plugin: net.bioclipse.rdf
    plugin: org.eclipse.zest.core
    plugin: org.eclipse.zest.layouts
    plugin: org.eclipse.draw2d
  feature: net.bioclipse.sampledata
    plugin: net.bioclipse.data.sampledata
  feature: net.bioclipse.speclipse_feature
    plugin: net.bioclipse.nmrshiftdb
    plugin: net.bioclipse.specmol
    plugin: net.bioclipse.spectrum
    plugin: net.bioclipse.bibtex
    plugin: net.bioclipse.webservices
    plugin: org.apache.commons.logging
    plugin: org.xmlpull.xpp3
    plugin: net.bioclipse.cml
    plugin: org.xmlcml.cmlxom
    plugin: net.bioclipse.xom
  feature: net.bioclipse.structuredb_feature
    plugin: net.bioclipse.structuredb
    plugin: net.bioclipse.services
    plugin: net.bioclipse.hsqldb
    plugin: org.apache.commons.codec
  feature: net.bioclipse.test_feature
    plugin: net.bioclipse.cdk.business.test
    plugin: net.bioclipse.cdk.debug.test
    plugin: net.bioclipse.cdk.jchempaint.test
    plugin: net.bioclipse.cdk.qsar.test
    plugin: net.bioclipse.cdk.ui.tests
    plugin: net.bioclipse.cml.tests
    plugin: net.bioclipse.core.tests
    plugin: net.bioclipse.encryption.tests
    plugin: net.bioclipse.inchi.business.test
    plugin: net.bioclipse.jmol.test
    plugin: net.bioclipse.scripting.tests
    plugin: net.bioclipse.scripting.ui.tests
    plugin: net.bioclipse.tests
    plugin: net.bioclipse.ui.business.tests
    plugin: net.bioclipse.ui.tests
    plugin: net.bioclipse.usermanager.tests
  feature: net.bioclipse.usermanager_feature
    plugin: net.bioclipse.usermanager
  feature: net.bioclipse.xml_feature
    plugin: org.eclipse.debug.ui
    plugin: org.eclipse.search
    plugin: org.eclipse.ltk.ui.refactoring
    plugin: org.eclipse.debug.core
    plugin: org.eclipse.core.variables
    plugin: org.eclipse.ui.console
    plugin: org.eclipse.team.core
    plugin: org.eclipse.team.ui
    plugin: org.eclipse.compare
    plugin: org.eclipse.ltk.core.refactoring
    plugin: org.eclipse.wst.sse.ui
    plugin: org.eclipse.wst.validation
    plugin: org.eclipse.osgi.util
    plugin: org.eclipse.wst.common.emf
    plugin: org.eclipse.core.runtime.compatibility
  feature: net.bioclipse.xws4j_feature
    plugin: net.bioclipse.xws4j
    plugin: org.eclipse.ui.console
    plugin: org.eclipse.core.variables
    plugin: net.bioclipse.services
  feature: net.bioclipse_feature
    plugin: com.ibm.icu
    plugin: jcl104.over.slf4j
    plugin: net.bioclipse.core
    plugin: net.bioclipse.logger
    plugin: net.bioclipse.scripting
    plugin: net.bioclipse.ui
    plugin: net.sf.cglib
    plugin: org.apache.lucene
    plugin: org.eclipse.core.commands
    plugin: org.eclipse.core.contenttype
    plugin: org.eclipse.core.databinding
    plugin: org.eclipse.core.expressions
    plugin: org.eclipse.core.filebuffers
    plugin: org.eclipse.core.filesystem
    plugin: org.eclipse.core.filesystem.macosx
    plugin: org.eclipse.core.jobs
    plugin: org.eclipse.core.resources
    plugin: org.eclipse.core.resources.compatibility
    plugin: org.eclipse.core.runtime
    plugin: org.eclipse.equinox.app
    plugin: org.eclipse.equinox.common
    plugin: org.eclipse.equinox.preferences
    plugin: org.eclipse.equinox.registry
    plugin: org.eclipse.help
    plugin: org.eclipse.jface
    plugin: org.eclipse.jface.databinding
    plugin: org.eclipse.jface.text
    plugin: org.eclipse.osgi
    plugin: org.eclipse.swt
    plugin: org.eclipse.swt.carbon.macosx
    plugin: org.eclipse.text
    plugin: org.eclipse.ui
    plugin: org.eclipse.ui.browser
    plugin: org.eclipse.ui.carbon
    plugin: org.eclipse.ui.cheatsheets
    plugin: org.eclipse.ui.editors
    plugin: org.eclipse.ui.forms
    plugin: org.eclipse.ui.ide
    plugin: org.eclipse.ui.intro
    plugin: org.eclipse.ui.navigator
    plugin: org.eclipse.ui.views
    plugin: org.eclipse.ui.workbench
    plugin: org.eclipse.ui.workbench.texteditor
    plugin: org.springframework.bundle.osgi.core
    plugin: org.springframework.bundle.osgi.extender
    plugin: org.springframework.bundle.osgi.io
    plugin: org.springframework.bundle.spring.aop
    plugin: org.springframework.bundle.spring.aspects
    plugin: org.springframework.bundle.spring.beans
    plugin: org.springframework.bundle.spring.context
    plugin: org.springframework.bundle.spring.core
    plugin: org.springframework.osgi.aopalliance.osgi
    plugin: org.springframework.osgi.log4j.osgi
    plugin: slf4j.api
    plugin: slf4j.log4j12
    plugin: org.eclipse.ui.navigator.resources
    plugin: org.eclipse.ui.views.properties.tabbed
    plugin: org.eclipse.core.filesystem.hpux.ia64_32
    plugin: org.eclipse.core.filesystem.linux.ppc
    plugin: org.eclipse.core.filesystem.linux.x86
    plugin: org.eclipse.core.filesystem.linux.x86_64
    plugin: org.eclipse.core.filesystem.solaris.sparc
    plugin: org.eclipse.core.filesystem.win32.x86
    plugin: org.eclipse.core.resources.win32.x86
    plugin: org.eclipse.swt.gtk.linux.ppc
    plugin: org.eclipse.swt.gtk.linux.x86
    plugin: org.eclipse.swt.gtk.linux.x86_64
    plugin: org.eclipse.swt.gtk.solaris.sparc
    plugin: org.eclipse.swt.motif.aix.ppc
    plugin: org.eclipse.swt.motif.hpux.ia64_32
    plugin: org.eclipse.swt.win32.win32.x86
    plugin: org.eclipse.swt.win32.win32.x86_64
    plugin: org.eclipse.swt.wpf.win32.x86
    plugin: org.eclipse.ui.win32
    plugin: org.eclipse.help.appserver
    plugin: org.eclipse.help.base
    plugin: org.eclipse.help.ui
    plugin: org.eclipse.help.webapp
    plugin: javax.servlet
    plugin: javax.servlet.jsp
    plugin: org.eclipse.equinox.http.jetty
    plugin: org.eclipse.equinox.http.registry
    plugin: org.eclipse.equinox.http.servlet
    plugin: org.eclipse.equinox.jsp.jasper
    plugin: org.eclipse.equinox.jsp.jasper.registry
    plugin: org.apache.commons.el
    plugin: org.apache.jasper
    plugin: org.apache.lucene.analysis
    plugin: org.mortbay.jetty
    plugin: org.eclipse.osgi.services
    plugin: org.eclipse.core.net
    plugin: org.eclipse.core.net.linux.x86
    plugin: org.eclipse.core.net.win32.x86
    plugin: org.eclipse.ui.net
    plugin: org.eclipse.equinox.security
    plugin: org.eclipse.equinox.security.macosx
    plugin: org.eclipse.equinox.security.win32.x86
    plugin: org.eclipse.equinox.security.ui
    plugin: org.eclipse.update.configurator
    plugin: org.eclipse.update.core
    plugin: org.eclipse.update.core.linux
    plugin: org.eclipse.update.core.win32
    plugin: org.eclipse.update.ui
    plugin: org.apache.ant
    plugin: org.springframework.bundle.spring.jdbc
    plugin: org.springframework.bundle.spring.orm
    plugin: org.springframework.bundle.spring.tx
    plugin: org.springframework.osgi.backport-util-concurrent.osgi
    plugin: net.bioclipse.scripting.ui
    plugin: net.sourceforge.jseditor
    plugin: nu.psnet.quickimage
    plugin: net.bioclipse.ui.business
    plugin: org.openscience.cdk.ioformats
    plugin: net.bioclipse.ioformats
    plugin: org.openscience.cdk.annotation
    plugin: net.bioclipse.gist
    plugin: net.bioclipse.usermanager
    plugin: net.bioclipse.encryption
    plugin: org.apache.commons.codec
    plugin: org.eclipse.ui.intro.universal
    plugin: net.bioclipse.data
  feature: se.uu.farmbio.hivpred-feature
    plugin: org.eclipse.ui.console
    plugin: org.eclipse.core.variables
    plugin: se.uu.farmbio.hivpred.client
    plugin: se.uu.farmbio.hivpred.model
    plugin: org.eclipse.emf.ecore
    plugin: org.eclipse.emf.ecore.xmi
    plugin: org.apache.xerces
    plugin: org.apache.xml.resolver
    plugin: org.eclipse.emf.common
    plugin: org.eclipse.wst.common.emf
    plugin: org.eclipse.wst.sse.core
    plugin: org.eclipse.wst.xml.core
    plugin: javax.xml
    plugin: org.apache.xml.serializer
    plugin: org.eclipse.jem.util
    plugin: org.eclipse.osgi.util
    plugin: org.eclipse.wst.common.core
    plugin: org.eclipse.wst.common.environment
    plugin: org.eclipse.wst.common.frameworks
    plugin: org.eclipse.wst.common.uriresolver
Creating main toc...
mkdir: output/net.bioclipse.ui/html: No such file or directory
usage: cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file target_file
       cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file ... target_directory
find: output/net.bioclipse.ui/html/tutorials/.: No such file or directory
mkdir: output/net.bioclipse.ui/html: No such file or directory
usage: cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file target_file
       cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file ... target_directory
find: output/net.bioclipse.ui/html/tutorials/.: No such file or directory
mkdir: output/net.bioclipse.ui/html: No such file or directory
usage: cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file target_file
       cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file ... target_directory
find: output/net.bioclipse.ui/html/tutorials/.: No such file or directory
mkdir: output/net.bioclipse.ui/html: No such file or directory
usage: cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file target_file
       cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file ... target_directory
find: output/net.bioclipse.ui/html/tutorials/.: No such file or directory
mkdir: output/net.bioclipse.ui/html: No such file or directory
usage: cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file target_file
       cp [-R [-H | -L | -P]] [-fi | -n] [-pvX] source_file ... target_directory
find: output/net.bioclipse.ui/html/tutorials/.: No such file or directory
cp: plugins/net.bioclipse.ui/html/developers/*: No such file or directory