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mbk0asis/deeptools_2

Created April 6, 2018 05:21
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deeptools_2
computeMatrix scale-regions -S 2m*.bw 20m*.bw 28m*.bw -R repeatMasker_mm10/ERV1.bed -o Muscle.ERV1.matrix.gz --skipZeros -bs 10 -a 1000 -b 1000 --regionBodyLength 2000 -bl blackList_LINE.LTR
plotHeatmap --whatToShow 'heatmap and colorbar' -m Muscle.ERV1.matrix.gz -out test.Muscle.ERV1.Heatmap.png --samplesLabel 2m-1 2m-2 20m-1 20m-3 28m-1 28m-2 --heatmapHeight 10 --heatmapWidth 1.5 --xAxisLabel "" --regionsLabel "" --startLabel "s" --endLabel "e" --colorList 'white,black'
plotProfile -m Muscle.LINE.bin500.matrix.gz -out Muscle.LINE.bin500.Heatmap.pdf --plotFileFormat pdf --plotHeight 8 --perGroup --averageType mean --colors black red blue --plotType se --startLabel "start" --endLabel "end" --regionsLabel ""
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