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dta <- read.csv("file:///C:/Users/bk/Desktop/TEST_data.csv",header = T, row.names = 1) | |
head(dta) | |
cl <- kmeans(cntNorm,6) | |
cluster<-cl$cluster | |
table(cluster) | |
rNames <- rownames(cnrNorm) | |
df<-data.frame(cntNorm, rNames, cluster) # attach cluster info on the data frame | |
head(df) | |
library(reshape2) | |
mdata <- melt(df, id=c("rNames","cluster")) | |
head(mdata) | |
# plotting using ggplot2 | |
library(ggplot2) | |
jit <- position_jitter (width = .08, height = .08) | |
ggplot(mdata, aes(x=variable, y=log2(1+value), group = rNames)) + theme_bw() + | |
geom_line(position = jit, colour = alpha("black", 0.1)) + | |
stat_summary(aes(group = cluster), fun = mean, geom = "line", color="red", size = .5) + | |
# theme(axis.text.x = element_text(angle = 90, hjust = 1)) + | |
facet_wrap(~ cluster, ncol = 5, scales = "free") |
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