Skip to content

Instantly share code, notes, and snippets.

@mbk0asis

mbk0asis/featureCounts

Created July 20, 2018 07:38
Show Gist options
  • Save mbk0asis/73899ec872198b69c42f5b6b186be9af to your computer and use it in GitHub Desktop.
Save mbk0asis/73899ec872198b69c42f5b6b186be9af to your computer and use it in GitHub Desktop.
Download ZIP
Raw
featureCounts
# counting RNA-seq reads
# similar results with htseq-count w/ "UNION"
featureCounts -T 35 -p -t exon -g rmsk_id -a L1.ERV1.ERVK.ERVL.MaLR.gtf -o featureCounts.results \
sample1.bam sample2.bam sample3.bam
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment