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mdoering / names.tsv
Created July 18, 2024 10:05
ChecklistBank name matching input example file
ID rank scientificName authorship kingdom family
id1000 species Cactus affinis Kuntze Plantae Cactaceae
id1001 species Cactus cactus (Vávra, 1900) Animalia Macrothricidae
id1002 genus Oenanthe
id1003 genus Oenanthe L.
id1004 genus Oenanthe Plantae
id1005 genus Oenanthe Animalia
id1006 species Abies alba Mill.
article
Bankí, O., Roskov, Y., Hernández, D., & Plata, C. (2024). Catalogue of Life (Version 2024-06-15). Catalogue of Life. https://doi.org/10.15468/col.grt63j
article-journal
Bankí, O., Roskov, Y., Hernández, D., & Plata, C. (2024). Catalogue of Life. https://doi.org/10.15468/col.grt63j
article-magazine
Bankí, O., Roskov, Y., Hernández, D., & Plata, C. (2024, June 15). Catalogue of Life. https://doi.org/10.15468/col.grt63j
article-newspaper
Bankí, O., Roskov, Y., Hernández, D., & Plata, C. (2024, June 15). Catalogue of Life. https://doi.org/10.15468/col.grt63j
bill
Catalogue of Life, (2024) (testimony of Olaf Bankí, Yuri Roskov, Diana Hernández, & Camila Plata). https://doi.org/10.15468/col.grt63j

Configs & UI

Sector Configs

  • split sectors by code, e.g. IUCN
  • configs, notes
  • search for attach sectors, show FADA Moinidae placed in infra/suborder
  • priority
  • ITIS, WCVP, WoRMS again. Reuse base decisions (search for WCVP), but not for WoRMS which are separate datasets.
    • block or update decision (author, status change)
  • sector publisher
@mdoering
mdoering / xrelease-demo-cfg.yaml
Last active April 3, 2024 13:41
XRelease demo config
# parts of this extended COL checklist configuration was copied from the backbone configs:
# https://github.com/gbif/gbif-configuration/blob/master/cli/nub/config/clb-nub.yaml
# dataset metadata with project variables to be applied to each release
alias: "MD-{attempt}"
title: Merge Demo
version: "{attempt}"
# taxon to use for incertae sedis names during merges
incertaeSedis:
@mdoering
mdoering / reference.bib
Last active October 30, 2023 10:13
TextTree example with properties
@book {SysNat,
author = "Carl Linnaeus",
title = "Systema naturae : per regna tria natura, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis.",
publisher = "Impensis direct. Laurentii Salvii",
address = "Holmiae (Stockholm)",
year = 1766,
volume = 1,
edition = "12th",
pages = {1--532}
}
@mdoering
mdoering / crossref-csl.json
Created October 12, 2023 05:11
crossref csl-json example
{
"DOI": "10.1007/s00705-021-05156-1",
"ISSN": [
"0304-8608",
"1432-8798"
],
"URL": "http://dx.doi.org/10.1007/s00705-021-05156-1",
"alternative-id": [
"5156"
],
alias: "XTEST-{date,yyyy-MM-dd}"
title: XRelease Test
version: "{date,yyyy-MM-dd}"
description: Testing the XRelease feature of ChecklistBank
# taxon to use for incertae sedis names during merges
incertaeSedis:
name: incertae sedis
rank: unranked
status: PROVISIONALLY_ACCEPTED
@mdoering
mdoering / clb-nub.yaml
Created August 22, 2023 08:00
nub config 2023
autoImport: true
validate: false
runAssertions: false
groupBasionyms: true
keepLonelyAutonyms: false
keepEmptyImplicitNames: false
blacklist:
- Calendrella cinerea ongumaensis # https://github.com/gbif/checklistbank/issues/47
- Tricholaema leucomelan namaqua # https://github.com/gbif/checklistbank/issues/46
fdfdfdfd
fdfddf
@mdoering
mdoering / aster-xrel.yaml
Created March 15, 2023 13:40
Aster configs
alias: "XAST{attempt}"
title: Extended Asterales
version: "{attempt}"
description: |
The World Plants and WCVP Asterales order extended by various merge sectors to increase coverage
and test system behavior.
# GBIF publisher keys to follow and create sectors for if missing
sourcePublisher:
# - bb922300-7ddb-11de-a300-90ac77aa923f # Plazi