Created
February 3, 2015 17:54
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<Test-sra> | |
<Version> | |
NCBI SRA Toolkit release version: 2.4.3.<br/> | |
Latest available NCBI SRA Toolkit release version: 2.4.3.<br/> | |
You already have the latest version of SRA Toolkit. | |
</Version> | |
<Os>Darwin LT-SHIRLEYM.local 14.1.0 Darwin Kernel Version 14.1.0: Mon Dec 22 23:10:38 PST 2014; root:xnu-2782.10.72~2/RELEASE_X86_64 x86_64</Os> | |
<Ascp> | |
ascp_locate = RC(rcNS,rcFile,rcCopying,rcFile,rcNotFound) | |
<MaxRate>300m</MaxRate> | |
<Disabled>false</Disabled> | |
</Ascp> | |
<Object> | |
SRR390728 NotFound - NotFound <br/> | |
<Resolve> | |
Local: not found<br/> | |
Remote http: not found<br/> | |
Cache http: skipped<br/> | |
Remote fasp: not found<br/> | |
Cache fasp: skipped<br/> | |
VResolverQuery(SRR390728, Http, local, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/> | |
VResolverQuery(SRR390728, Http, local, remote=NULL, cache=NULL)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/> | |
VResolverQuery(SRR390728, Http, local=NULL, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/> | |
VResolverQuery(SRR390728, FaspHttp, local, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/> | |
VResolverQuery(SRR390728, FaspHttp, local, remote=NULL, cache=NULL)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/> | |
VResolverQuery(SRR390728, FaspHttp, local=NULL, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/> | |
</Resolve> | |
<Dependencies> | |
<Dependencies> | |
</Object> | |
<Report> | |
<Run> | |
<Date> | |
<Start value="Tue Feb 3 2015 12:53:47 PM"/> | |
<End value="Tue Feb 3 2015 12:53:47 PM"/> | |
</Date> | |
<Home name="HOME" value="/Users/matt"/> | |
<Cwd>/private/tmp</Cwd> | |
<CommandLine argc="2"> | |
<Arg index="0" value="test-sra"/> | |
<Arg index="1" value="SRR390728"/> | |
</CommandLine> | |
<Result rc="RC(rcNoErr)"/> | |
<User admin="false"/> | |
</Run> | |
<Configuration> | |
<Files count="1"> | |
<File name="/Users/matt/.ncbi/user-settings.mkfg"/> | |
</Files> | |
<refseq state="not found"/> | |
<krypto file="not found">/Users/matt/.ncbi/vdb-passwd</krypto> | |
<sra state="not found"/> | |
<Config> | |
<APPNAME>test-sra</APPNAME> | |
<BUILD>RELEASE</BUILD> | |
<HOME>/Users/matt</HOME> | |
<HOST></HOST> | |
<NCBI_HOME>/Users/matt/.ncbi</NCBI_HOME> | |
<NCBI_SETTINGS>/Users/matt/.ncbi/user-settings.mkfg</NCBI_SETTINGS> | |
<OS>mac</OS> | |
<PWD>/private/tmp</PWD> | |
<USER>matt</USER> | |
<VDB_CONFIG></VDB_CONFIG> | |
<VDB_ROOT></VDB_ROOT> | |
<kfg> | |
<arch> | |
<bits>64</bits> | |
<name>LT-SHIRLEYM.local</name> | |
</arch> | |
<dir>/Users/matt/.ncbi</dir> | |
<name>user-settings.mkfg</name> | |
</kfg> | |
<krypto> | |
<pwfile>/Users/matt/.ncbi/vdb-passwd</pwfile> | |
</krypto> | |
<repository> | |
<remote> | |
<main> | |
<NCBI> | |
<disabled>no</disabled> | |
</NCBI> | |
</main> | |
</remote> | |
<user> | |
<default-path>/Users/matt/ncbi</default-path> | |
<main> | |
<public> | |
<apps> | |
<file> | |
<volumes> | |
<flat>files</flat> | |
</volumes> | |
</file> | |
<nakmer> | |
<volumes> | |
<nakmerFlat>nannot</nakmerFlat> | |
<nannotFlat>nannot</nannotFlat> | |
</volumes> | |
</nakmer> | |
<refseq> | |
<volumes> | |
<refseq>refseq</refseq> | |
</volumes> | |
</refseq> | |
<sra> | |
<volumes> | |
<sraFlat>sra</sraFlat> | |
</volumes> | |
</sra> | |
<wgs> | |
<volumes> | |
<wgsFlat>wgs</wgsFlat> | |
</volumes> | |
</wgs> | |
</apps> | |
<cache-enabled>true</cache-enabled> | |
<root>/Users/matt/ncbi/public</root> | |
</public> | |
</main> | |
</user> | |
</repository> | |
<tools> | |
<ascp> | |
<max_rate>300m</max_rate> | |
</ascp> | |
</tools> | |
<vdb> | |
<lib> | |
<paths> | |
<kfg></kfg> | |
</paths> | |
</lib> | |
</vdb> | |
</Config> | |
<CurrentProtectedRepository found="false"/> | |
</Configuration> | |
<Object path="SRR390728" type="unknown"> | |
</Object> | |
<SOFTWARE> | |
<VDBLibrary vers="2.6.4"/> | |
<Build static="false"> | |
<Error rc="RC(rcCont,rcNamelist,rcInserting,rcString,rcEmpty)" function="VDBManagerListExternalSchemaModules"/> | |
</Build> | |
<Tool date="Dec 29 2014" name="test-sra" vers="0"> | |
<Binary path="/usr/local/bin/test-sra" type="alias" md5="1998c7579c74b92838ee7f221fb99204"> | |
<Alias resolved="../Cellar/sratoolkit/2.4.3/bin/test-sra"/> | |
</Binary> | |
</Tool> | |
</SOFTWARE> | |
</Report> | |
</Test-sra> | |
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