mgalardini

#!/usr/bin/env python

import sys

if len(sys.argv) < 4:
    sys.stderr.write('USAGE: map2PDB PDB_FILE ALIG_FASTA POS_AA [AA_POS, [AA_POS, ...]]')
    sys.stderr.write('\n')
    sys.exit(65)
    
pdb = sys.argv[1]

mgalardini

#!/usr/bin/env python
# -*- coding: utf-8 -*-

#
# Generated Thu Nov 20 17:12:58 2014 by generateDS.py version 2.13a.
#
# Command line options:
#   ('-f', '')
#   ('-o', 'sifts.py')
#

mgalardini

********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme.nbcr.net.

This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs.  MAST is available

mgalardini

<script type="text/javascript"> show=true; function toggle(){ if (show){ $('div.input').hide(); }else{ $('div.input').show(); } show = !show }

mgalardini

#!/bin/bash

# Copyright (C) <2015> EMBL-European Bioinformatics Institute

# This program is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.

# This program is distributed in the hope that it will be useful,

mgalardini

mgalardini

{% extends 'full.tpl' %}

{% block header %}
{{ super() }}
<script type="text/javascript">
    show=true;
    function toggle(){
        if (show){
            $('div.input').hide();
        }else{

mgalardini

mgalardini

mgalardini

#!/usr/bin/env python
# Copyright (C) <2015> EMBL-European Bioinformatics Institute

# This program is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of