stuff to change in lobstr for Mac

gistfile1.txt

diff --git a/configure.ac b/configure.ac
index 81249bd..c76f394 100644
--- a/configure.ac
+++ b/configure.ac
@@ -24,10 +24,12 @@ AC_PROG_CXX
 AC_PROG_INSTALL
 AC_PROG_FC
 AC_PROG_F77
+#AC_F77_WRAPPERS
 
 PKG_CHECK_MODULES([FFTW], [fftw3])
 AX_PTHREAD()
 AX_CHECK_ZLIB()
+#PKG_CHECK_MODULES([BLAS], [blas])
 AX_BLAS()
 if test "$ax_blas_ok" = "no"; then
    AC_MSG_ERROR([
@@ -42,6 +44,8 @@ try adding '--with-blas=<DIR>' (see ./configure --help).
 ------------------------------------------
 ])
 fi
+
+
 AX_BOOST_BASE([1.38.0])
 PKG_CHECK_MODULES([CPPUNIT],[cppunit])
 
diff --git a/src/bwt.c b/src/bwt.c
index 10b838a..ec0205b 100644
--- a/src/bwt.c
+++ b/src/bwt.c
@@ -87,7 +87,7 @@ static inline int __occ_aux(uint64_t y, int c)
 	return ((y + (y >> 4)) & 0xf0f0f0f0f0f0f0full) * 0x101010101010101ull >> 56;
 }
 
-inline bwtint_t bwt_occ(const bwt_t *bwt, bwtint_t k, ubyte_t c)
+bwtint_t bwt_occ(const bwt_t *bwt, bwtint_t k, ubyte_t c)
 {
 	bwtint_t n, l, j;
 	uint32_t *p;
@@ -113,7 +113,7 @@ inline bwtint_t bwt_occ(const bwt_t *bwt, bwtint_t k, ubyte_t c)
 }
 
 // an analogy to bwt_occ() but more efficient, requiring k <= l
-inline void bwt_2occ(const bwt_t *bwt, bwtint_t k, bwtint_t l, ubyte_t c, bwtint_t *ok, bwtint_t *ol)
+void bwt_2occ(const bwt_t *bwt, bwtint_t k, bwtint_t l, ubyte_t c, bwtint_t *ok, bwtint_t *ol)
 {
 	bwtint_t _k, _l;
 	if (k == l) {
@@ -154,7 +154,7 @@ inline void bwt_2occ(const bwt_t *bwt, bwtint_t k, bwtint_t l, ubyte_t c, bwtint
 	((bwt)->cnt_table[(b)&0xff] + (bwt)->cnt_table[(b)>>8&0xff]		\
 	 + (bwt)->cnt_table[(b)>>16&0xff] + (bwt)->cnt_table[(b)>>24])
 
-inline void bwt_occ4(const bwt_t *bwt, bwtint_t k, bwtint_t cnt[4])
+void bwt_occ4(const bwt_t *bwt, bwtint_t k, bwtint_t cnt[4])
 {
 	bwtint_t l, j, x;
 	uint32_t *p;
@@ -174,7 +174,7 @@ inline void bwt_occ4(const bwt_t *bwt, bwtint_t k, bwtint_t cnt[4])
 }
 
 // an analogy to bwt_occ4() but more efficient, requiring k <= l
-inline void bwt_2occ4(const bwt_t *bwt, bwtint_t k, bwtint_t l, bwtint_t cntk[4], bwtint_t cntl[4])
+void bwt_2occ4(const bwt_t *bwt, bwtint_t k, bwtint_t l, bwtint_t cntk[4], bwtint_t cntl[4])
 {
 	bwtint_t _k, _l;
 	if (k == l) {
diff --git a/src/bwt.h b/src/bwt.h
index 4aef38d..79745c2 100644
--- a/src/bwt.h
+++ b/src/bwt.h
@@ -86,14 +86,14 @@ extern "C" {
 
 	void bwt_bwtupdate_core(bwt_t *bwt);
 
-	inline bwtint_t bwt_occ(const bwt_t *bwt, bwtint_t k, ubyte_t c);
-	inline void bwt_occ4(const bwt_t *bwt, bwtint_t k, bwtint_t cnt[4]);
+	bwtint_t bwt_occ(const bwt_t *bwt, bwtint_t k, ubyte_t c);
+	void bwt_occ4(const bwt_t *bwt, bwtint_t k, bwtint_t cnt[4]);
 	bwtint_t bwt_sa(const bwt_t *bwt, bwtint_t k);
 
 	// more efficient version of bwt_occ/bwt_occ4 for retrieving two close Occ values
 	void bwt_gen_cnt_table(bwt_t *bwt);
-	inline void bwt_2occ(const bwt_t *bwt, bwtint_t k, bwtint_t l, ubyte_t c, bwtint_t *ok, bwtint_t *ol);
-	inline void bwt_2occ4(const bwt_t *bwt, bwtint_t k, bwtint_t l, bwtint_t cntk[4], bwtint_t cntl[4]);
+	void bwt_2occ(const bwt_t *bwt, bwtint_t k, bwtint_t l, ubyte_t c, bwtint_t *ok, bwtint_t *ol);
+	void bwt_2occ4(const bwt_t *bwt, bwtint_t k, bwtint_t l, bwtint_t cntk[4], bwtint_t cntl[4]);
 
 	int bwt_match_exact(const bwt_t *bwt, int len, const ubyte_t *str, bwtint_t *sa_begin, bwtint_t *sa_end);
 	int bwt_match_exact_alt(const bwt_t *bwt, int len, const ubyte_t *str, bwtint_t *k0, bwtint_t *l0);

gistfile2.txt

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