3D Force-Directed Graph with Groups Dataset

.block

license: MIT
border: no

3d-force-graph.css

.graph-nav-info {
    position: absolute;
    bottom: 5px;
    width: 100%;
    text-align: center;
    color: slategrey;
    opacity: 0.7;
    font-size: 10px;
}

.graph-tooltip {
    position: absolute;
    color: lavender;
    font-size: 18px;
}

3d-force-graph.js

function ForceGraph3D() {

	const CAMERA_DISTANCE2NODES_FACTOR = 150;

	class CompProp {
		constructor(name, initVal = null, redigest = true, onChange = newVal => {}) {
			this.name = name;
			this.initVal = initVal;
			this.redigest = redigest;
			this.onChange = onChange;
		}
	}

	const env = { // Holds component state
		initialised: false,
		onFrame: () => {}
	};

	const exposeProps = [
		new CompProp('width', window.innerWidth),
		new CompProp('height', window.innerHeight),
		new CompProp('graphData', {
			nodes: { 1: { name: 'mock', val: 1 } },
			links: [[1, 1]] // [from, to]
		}),
		new CompProp('nodeRelSize', 4), // volume per val unit
		new CompProp('lineOpacity', 0.2),
		new CompProp('valAccessor', node => node.val),
		new CompProp('nameAccessor', node => node.name),
		new CompProp('colorAccessor', node => node.color),
		new CompProp('initialEngineTicks', 0), // how many times to tick the force engine at init before starting to render
		new CompProp('maxConvergeTime', 15000), // ms
		new CompProp('maxConvergeFrames', 300)
	];

	function initStatic() {
		// Wipe DOM
		env.domNode.innerHTML = '';

		// Add nav info section
		const navInfo = document.createElement('div');
		navInfo.classList.add('graph-nav-info');
		navInfo.innerHTML = "MOVE mouse & press LEFT/A: rotate, MIDDLE/S: zoom, RIGHT/D: pan";
		env.domNode.appendChild(navInfo);

		// Setup tooltip
		env.toolTipElem = document.createElement('div');
		env.toolTipElem.classList.add('graph-tooltip');
		env.domNode.appendChild(env.toolTipElem);

		// Capture mouse coords on move
		env.raycaster = new THREE.Raycaster();
		env.mouse = new THREE.Vector2();
		env.mouse.x = -2; // Initialize off canvas
		env.mouse.y = -2;
		env.domNode.addEventListener("mousemove", ev => {
			// update the mouse pos
			const offset = getOffset(env.domNode),
				relPos = {
					x: ev.pageX - offset.left,
					y: ev.pageY - offset.top
				};
			env.mouse.x = (relPos.x / env.width) * 2 - 1;
			env.mouse.y = -(relPos.y / env.height) * 2 + 1;

			// Move tooltip
			env.toolTipElem.style.top = (relPos.y - 40) + 'px';
			env.toolTipElem.style.left = (relPos.x - 20) + 'px';

			function getOffset(el) {
				const rect = el.getBoundingClientRect(),
					scrollLeft = window.pageXOffset || document.documentElement.scrollLeft,
					scrollTop = window.pageYOffset || document.documentElement.scrollTop;
				return { top: rect.top + scrollTop, left: rect.left + scrollLeft };
			}
		}, false);

		// Setup camera
		env.camera = new THREE.PerspectiveCamera();
		env.camera.far = 20000;
		env.camera.position.z = 1000;

		// Setup scene
		env.scene = new THREE.Scene();

		// Setup renderer
		env.renderer = new THREE.WebGLRenderer();
		env.domNode.appendChild(env.renderer.domElement);

		// Add camera interaction
		env.controls = new THREE.TrackballControls(env.camera, env.renderer.domElement);


		env.initialised = true;

		//

		// Kick-off renderer
		(function animate() { // IIFE
			env.onFrame();

			// Update tooltip
			env.raycaster.setFromCamera(env.mouse, env.camera);
			const intersects = env.raycaster.intersectObjects(env.scene.children);
			env.toolTipElem.innerHTML = intersects.length ? intersects[0].object.name || '' : '';

			// Frame cycle
			env.controls.update();
			env.renderer.render(env.scene, env.camera);
			requestAnimationFrame(animate);
		})()
	}

	function digest() {
		if (!env.initialised) { return }

		resizeCanvas();

		env.onFrame = ()=>{}; // Clear previous frame hook
		env.scene = new THREE.Scene(); // Clear the place

		// Build graph with data
		const graph = ngraph.graph();
		for (let nodeId in env.graphData.nodes) {
			graph.addNode(nodeId, env.graphData.nodes[nodeId]);
		}
		for (let link of env.graphData.links) {
			graph.addLink(...link, {});
		}

		// console.log('graph from 3d-force-graph', graph);

		// Add WebGL objects
		graph.forEachNode(node => {
			const nodeMaterial = new THREE.MeshBasicMaterial({ color: env.colorAccessor(node.data) || 0xffffaa, transparent: true });
			nodeMaterial.opacity = 0.75;

			const sphere = new THREE.Mesh(
				new THREE.SphereGeometry(Math.cbrt(env.valAccessor(node.data) || 1) * env.nodeRelSize),
				nodeMaterial
			);
			sphere.name = env.nameAccessor(node.data) || '';

			env.scene.add(node.data.sphere = sphere)
		});

		const lineMaterial = new THREE.MeshBasicMaterial({ color: 0xf0f0f0, transparent: true });
		lineMaterial.opacity = env.lineOpacity;
		graph.forEachLink(link => {
			const line = new THREE.Line(new THREE.Geometry(), lineMaterial);
			line.name = `${getNodeName(link.fromId)} > ${getNodeName(link.toId)}`;

			env.scene.add(link.data.line = line)

			function getNodeName(nodeId) {
				return env.nameAccessor(graph.getNode(nodeId).data);
			}
		});

		env.camera.lookAt(env.scene.position);
		env.camera.position.z = Math.cbrt(Object.keys(env.graphData.nodes).length) * CAMERA_DISTANCE2NODES_FACTOR;

		// Add force-directed layout
		const layout = ngraph.forcelayout3d(graph);

		for (let i=0; i<env.initialEngineTicks; i++) { layout.step(); } // Initial ticks before starting to render

		let cntTicks = 0;
		const startTickTime = new Date();
		env.onFrame = layoutTick;

		//

		function resizeCanvas() {
			if (env.width && env.height) {
				env.renderer.setSize(env.width, env.height);
				env.camera.aspect = env.width/env.height;
				env.camera.updateProjectionMatrix();
			}
		}

		function layoutTick() {
			if (cntTicks++ > env.maxConvergeFrames || (new Date()) - startTickTime > env.maxConvergeTime) {
				env.onFrame = ()=>{}; // Stop ticking graph
			}

			layout.step(); // Tick it

			// Update nodes position
			graph.forEachNode(node => {
				const sphere = node.data.sphere,
					pos = layout.getNodePosition(node.id);

				sphere.position.x = pos.x;
				sphere.position.y = pos.y;
				sphere.position.z = pos.z;
			});

			// Update links position
			graph.forEachLink(link => {
				const line = link.data.line,
					pos = layout.getLinkPosition(link.id);

				line.geometry.vertices = [
					new THREE.Vector3(pos.from.x, pos.from.y, pos.from.z),
					new THREE.Vector3(pos.to.x, pos.to.y, pos.to.z)
				];

				line.geometry.verticesNeedUpdate = true;
			})
		}
	}

	// Component constructor
	function chart(nodeElement) {
		env.domNode = nodeElement;

		initStatic();
		digest();

		return chart;
	}

	// Getter/setter methods
	exposeProps.forEach(prop => {
		chart[prop.name] = getSetEnv(prop.name, prop.redigest, prop.onChange);
		env[prop.name] = prop.initVal;
		prop.onChange(prop.initVal);

		function getSetEnv(prop, redigest = false,  onChange = newVal => {}) {
			return _ => {
				if (!arguments.length) { return env[prop] }
				env[prop] = _;
				onChange(_);
				if (redigest) { digest() }
				return chart;
			}
		}
	});

	// Reset to default state
	chart.resetState = function() {
		this.graphData({nodes: [], links: []})
			.nodeRelSize(4)
			.lineOpacity(0.2)
			.valAccessor(node => node.val)
			.nameAccessor(node => node.name)
			.colorAccessor(node => node.color)
			.initialEngineTicks(0)
			.maxConvergeTime(15000) // ms
			.maxConvergeFrames(300);

		return this;
	};

	chart.resetState(); // Set defaults at instantiation

	return chart;
}

README.md

a small iteration on @vastur's block 3D Force-Directed Graph (ThreeJS) that adds the groups.json graph dataset from @tomshanleynz's Network of groups example

---

3-dimensional representation of a force-directed iterative layout, using 3d-force-graph. This wrapper component uses ThreeJS/WebGL for rendering and ngraph for the 3D physics engine.

Cycle through various topological data sets using the button on the top-right.

blocks.json

{"nodes":[{"id":"4062045","user":"mbostock","description":"Force-Directed Graph"},{"id":"1341021","user":"mbostock","description":"Parallel Coordinates"},{"id":"1341281","user":"jasondavies","description":"Parallel Coordinates"},{"id":"b3ff6ae1c120eea654b5","user":"d3noob","description":"Simple d3.js Graph"},{"id":"4963004","user":"calvinmetcalf","description":"Quadtree Madness Round 2"},{"id":"4962892","user":"calvinmetcalf","description":"Quadtree Madness Round 2"},{"id":"4963273","user":"calvinmetcalf","description":"Quadtree Madness Round 2"},{"id":"4967213","user":"calvinmetcalf","description":"Rtree Madness"},{"id":"4060606","user":"mbostock","description":"Choropleth"},{"id":"4686432","user":"dwtkns","description":"Faux-3d Shaded Globe"},{"id":"3757101","user":"mbostock","description":"Lambert Azimuthal Equal-Area"},{"id":"5028304","user":"d3noob","description":"Sankey diagram with horizontal and vertical node movement"},{"id":"4343214","user":"mbostock","description":"Quadtree"},{"id":"1346410","user":"mbostock","description":"Pie Chart Update, II"},{"id":"1098617","user":"mbostock","description":"Arc Clock"},{"id":"4341574","user":"mbostock","description":"The Amazing Pie"},{"id":"4341417","user":"mbostock","description":"Donut Transitions"},{"id":"4183330","user":"mbostock","description":"World Tour"},{"id":"9656675","user":"mbostock","description":"Zoom to Bounding Box II"},{"id":"4707858","user":"mbostock","description":"Project to Bounding Box"},{"id":"1153292","user":"mbostock","description":"Mobile Patent Suits"},{"id":"2706022","user":"mbostock","description":"Force-Directed Graph with Mouseover"},{"id":"5141278","user":"d3noob","description":"Basic Directional Force Layout Diagram"},{"id":"5107491","user":"espinielli","description":"Random World Tour with flags"},{"id":"5044313","user":"mbostock","description":"Gray Earth"},{"id":"5141528","user":"d3noob","description":"Directional Force Layout Diagram with Node Highlighting"},{"id":"4342045","user":"mbostock","description":"Symbol Map"},{"id":"3711652","user":"mbostock","description":"Projection Transitions"},{"id":"4063530","user":"mbostock","description":"Circle Packing"},{"id":"3305854","user":"mbostock","description":"Custom Tweens"},{"id":"5180185","user":"mbostock","description":"Zipdecode"},{"id":"5386999","user":"herrstucki","description":"Zipdecode Switzerland"},{"id":"5416440","user":"mbostock","description":"Merging States II"},{"id":"5416405","user":"mbostock","description":"Merging States"},{"id":"4061961","user":"mbostock","description":"Bullet Charts"},{"id":"5518052","user":"milroc","description":"bar + sum: vanilla d3.js"},{"id":"5519642","user":"milroc","description":"bar + sum: reusable d3.js"},{"id":"5519819","user":"milroc","description":"bar + sum: d3.js & angular.js"},{"id":"5520449","user":"milroc","description":"bar + sum: d3.js & ember.js "},{"id":"5522467","user":"milroc","description":"bar + sum: d3.js & backbone.js"},{"id":"d22bbf92231876505e5d","user":"milroc","description":"bar + sum: d3.js, react.js, & Flux"},{"id":"5553051","user":"milroc","description":"    "},{"id":"5593150","user":"mbostock","description":"Vector Tiles"},{"id":"1642989","user":"mbostock","description":"Spline Transition"},{"id":"1705868","user":"mbostock","description":"Point-Along-Path Interpolation"},{"id":"5662135","user":"cloudshapes","description":"attrTween in a Transition to Move an Element Using a Function"},{"id":"1667367","user":"mbostock","description":"Focus+Context via Brushing"},{"id":"4180634","user":"mbostock","description":"World Map"},{"id":"5732685"},{"id":"4973620","user":"dwtkns","description":"Faux-3D Arcs"},{"id":"5732719","user":"darrenjaworski","description":"TOPOJSON from shapefile - OK Census tracts"},{"id":"5616813","user":"mbostock","description":"Vector Tiles"},{"id":"5874133","user":"darrenjaworski","description":"Tutorial I"},{"id":"5874214","user":"darrenjaworski","description":"Tutorial II"},{"id":"5874227","user":"darrenjaworski","description":"Tutorial III"},{"id":"5874229"},{"id":"5874233"},{"id":"5874236"},{"id":"5397362","user":"darrenjaworski","description":"Continuous gradient key"},{"id":"5886992","user":"d3noob","description":"Simple d3.js Bullet Chart example"},{"id":"1021953","user":"mbostock","description":"Multi-Foci Force Layout"},{"id":"5691513"},{"id":"1389927","user":"mbostock","description":"A Bar Chart"},{"id":"1129492","user":"mbostock","description":"Bounded Force Layout"},{"id":"5820393","user":"karmadude","description":"San Francisco Contours"},{"id":"6052814","user":"nbremer","description":"Self Organizing Map - Heatmap - D3"},{"id":"6052681","user":"nbremer","description":"Self Organizing Map - Hexagonal Heatmap - Lines"},{"id":"6187523","user":"CodeXmonk","description":"BulleT: a variant based on mbostock's bullet with Miso's d3.chart.js"},{"id":"5249328","user":"mbostock","description":"Hexagon Mesh"},{"id":"6150151","user":"nitaku","description":"Colored hex regions"},{"id":"3887118","user":"mbostock","description":"Scatterplot"},{"id":"6112167","user":"CodeXmonk","description":"Simple modification based on mbostock's Bullet Charts."},{"id":"1703449","user":"christophermanning","description":"Hamiltonian Graph Builder"},{"id":"6203413","user":"christophermanning","description":"CTA Line Simplification"},{"id":"4062085","user":"mbostock","description":"Population Pyramid"},{"id":"6226150","user":"cmdoptesc","description":"JavaScript D3: Drawing Concentric Arcs"},{"id":"5100636","user":"mbostock","description":"Arc Tween"},{"id":"6228457","user":"cmdoptesc","description":"JavaScript D3: Arc tween transitions using attrTween and attr methods"},{"id":"6279966","user":"hugolpz","description":"France_topographic_map.svg"},{"id":"5649592","user":"mbostock","description":"Stroke Dash Interpolation"},{"id":"2846454","user":"mbostock","description":"Force Layout & Matrix Market Format"},{"id":"4060366","user":"mbostock","description":"Voronoi Tessellation"},{"id":"1405439","user":"njvack","description":"Voronoi-based point picker"},{"id":"1734663","user":"christophermanning","description":"Voronoi Diagram with Force Directed Nodes and Delaunay Links"},{"id":"6439398","user":"simzou","description":"Kobe Bryant 2012-13 Game Log Line Graph"},{"id":"3884955","user":"mbostock","description":"Multi-Series Line Chart"},{"id":"6459889","user":"simzou","description":"US Map of Nielsen Media Markets"},{"id":"2206590","user":"mbostock","description":"click-to-zoom via transform"},{"id":"3019563","user":"mbostock","description":"Margin Convention"},{"id":"3894205","user":"mbostock","description":"Difference Chart"},{"id":"3885304","user":"mbostock","description":"Bar Chart"},{"id":"21746a9668ffdf6d8242","user":"nbremer","description":"Radar Chart Redesign"},{"id":"6514960","user":"nitaku","description":"Hilbert curve (L-system)"},{"id":"11094667","user":"ndarville","description":"Party Trend (Multi-Party Display)"},{"id":"5230564","user":"mbostock","description":"Times"},{"id":"6901037","user":"nitaku","description":"Circles"},{"id":"6622700","user":"nitaku","description":"GeoJSON squares"},{"id":"6173659","user":"nitaku","description":"Hex coordinates"},{"id":"7023140","user":"nitaku","description":"Gosper hex tiling"},{"id":"7008736","user":"nitaku","description":"Custom hex projection"},{"id":"6521802","user":"nitaku","description":"Gosper curve (L-system)"},{"id":"7015186","user":"nitaku","description":"Gosper hex tiling (fancy)"},{"id":"7023794","user":"nitaku","description":"Gosper regions"},{"id":"6982528","user":"nitaku","description":"TopoJSON geometrical renderer"},{"id":"7025272","user":"nitaku","description":"Precomputed Gosper regions"},{"id":"7051552","user":"phil-pedruco","description":"Disable zoom on scrollwheel but retain the ability to pan #2"},{"id":"7051484","user":"phil-pedruco","description":"Disable zoom on scrollwheel but retain the ability to pan #1"},{"id":"4063423","user":"mbostock","description":"Sunburst Partition"},{"id":"7032353","user":"radiocontrolled","description":"Humanitarian population by major Canadian city, 2012"},{"id":"4237768","user":"mbostock","description":"Voronoi Clipping"},{"id":"3846051","user":"mbostock","description":"Voronoi tests"},{"id":"7233233","user":"nitaku","description":"Voronoi"},{"id":"1157787","user":"mbostock","description":"Small Multiples"},{"id":"6476579","user":"Caged","description":"Using d3-tip to add tooltips to a d3 bar chart"},{"id":"2295155"},{"id":"3680999","user":"mbostock","description":"SVG Geometric Zooming"},{"id":"7328902","user":"jkutianski","description":"My attempt to add templating to d3.js"},{"id":"3750558","user":"mbostock","description":"Sticky Force Layout"},{"id":"7483341","user":"nitaku","description":"ID-based force layout"},{"id":"7493693","user":"nitaku","description":"Graph editing"},{"id":"5001347","user":"rkirsling","description":"Directed Graph Editor"},{"id":"7512487","user":"nitaku","description":"Graph editing tools"},{"id":"6890861","user":"nitaku","description":"IndexedDB"},{"id":"7517984","user":"nitaku","description":"Graph editing with persistence"},{"id":"7475950","user":"jkutianski","description":"A new attempt to add templating to d3.js"},{"id":"5052095","user":"timelyportfolio","description":""},{"id":"7188018","user":"radiocontrolled","description":"Humanitarian population by Canadian region, 2012"},{"id":"4339184","user":"mbostock","description":"Reingold–Tilford Tree"},{"id":"1093025","user":"mbostock","description":"Collapsible Indented Tree"},{"id":"7910706","user":"nitaku","description":"Random tree"},{"id":"7962295"},{"id":"7938492","user":"nitaku","description":"Random tree 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Domain"},{"id":"3808218","user":"mbostock","description":"General Update Pattern, I"},{"id":"8772179","user":"nitaku","description":"Space-flling curve layout (Gosper)"},{"id":"8784278","user":"nitaku","description":"Jigsaw treemap (Gosper)"},{"id":"8784942","user":"nitaku","description":"Jigsaw treemap (Hilbert)"},{"id":"8787102","user":"nitaku","description":"Hilbert treemap (area encoding)"},{"id":"4341134","user":"mbostock","description":"Hierarchical Edge Bundling"},{"id":"8788101","user":"nitaku","description":"Gosper treemap with hierarchical edge bundling"},{"id":"8566245","user":"nitaku","description":"Categorical color scale generator (HCL)"},{"id":"8246732","user":"radiocontrolled","description":"What per cent of people in the UK have used the Internet?"},{"id":"8900555","user":"nitaku","description":"Coloring of intersecting regions"},{"id":"8882722","user":"nitaku","description":"Label placement for Hilbert treemaps"},{"id":"8955159","user":"nitaku","description":"Stability of Peano curve"},{"id":"8947871","user":"nitaku","description":"Stable Hilbert curve"},{"id":"8947565","user":"nitaku","description":"Unstable Hilbert curve"},{"id":"6531064","user":"nitaku","description":"Peano (?) curve (L-system)"},{"id":"8949471","user":"nitaku","description":"Peano curve (L-system)"},{"id":"8968230","user":"nitaku","description":"FASS curve I (L-system)"},{"id":"4063269","user":"mbostock","description":"Bubble Chart"},{"id":"4327678","user":"herrstucki","description":"Swiss Cantons and Municipalities"},{"id":"9205257","user":"herrstucki","description":"Transitions with React and D3 I"},{"id":"9205264","user":"herrstucki","description":"Transitions with React and D3 II"},{"id":"9205238","user":"herrstucki","description":"Transitions with D3"},{"id":"9216081"},{"id":"9216751","user":"vlandham"},{"id":"9204795","user":"herrstucki","description":"Swiss Cantons and Municipalities with React"},{"id":"9265219","user":"bollwyvl","description":"A fishbone editor"},{"id":"9239214","user":"bollwyvl","description":"d3 fishbone"},{"id":"9572040","user":"dbuezas","description":"Pie Chart Labels with missing data"},{"id":"5126418","user":"mbostock","description":"New Jersey State Plane"},{"id":"4573883","user":"mbostock","description":"Threshold Key"},{"id":"9417919","user":"StewartNoyce","description":"D.C. Choropleth"},{"id":"3886208","user":"mbostock","description":"Stacked Bar Chart"},{"id":"950642","user":"mbostock","description":"Labeled Force Layout"},{"id":"9746652","user":"erkal","description":"Directed Links with Polygons"},{"id":"9746628","user":"erkal","description":"Mobile Patent Suits with Polygon Links"},{"id":"7607535","user":"mbostock","description":"Zoomable Circle Packing"},{"id":"7090426","user":"kerryrodden","description":"Sequences sunburst"},{"id":"9845999","user":"milroc","description":"Fitts's Bar, II"},{"id":"9842179"},{"id":"9842284"},{"id":"9842512","user":"milroc","description":"Fitts's Bar, I"},{"id":"9871234","user":"erkal","description":"General Update Pattern with playButton"},{"id":"9871048","user":"erkal","description":"playButton"},{"id":"9914167","user":"erkal","description":"waitAndEval II"},{"id":"9912897","user":"erkal","description":"waitAndEval"},{"id":"4282586","user":"mbostock","description":"Three-Axis 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d3.csv

data-set-loader.js

function getGraphDataSets() {

    // Color brewer paired set
    const colors = ['#a6cee3','#1f78b4','#b2df8a','#33a02c','#fb9a99','#e31a1c','#fdbf6f','#ff7f00','#cab2d6','#6a3d9a','#ffff99','#b15928'];

    const loadMiserables = function(Graph) {
        qwest.get('miserables.json').then((_, data) => {
            const nodes = {};
            data.nodes.forEach(node => { nodes[node.id] = node }); // Index by ID

            console.log('data from loadMiserables', data);

            Graph
                .resetState()
                .nameAccessor(node => node.id)
                .colorAccessor(node => parseInt(colors[node.group%colors.length].slice(1),16))
                .graphData({
                    nodes: nodes,
                    links: data.links.map(link => [link.source, link.target])
                });
        });
    };
    loadMiserables.description = "<em>Les Miserables</em> data (<a href='https://bl.ocks.org/mbostock/4062045'>4062045</a>)";

    //

    const loadBlocks = function(Graph) {
        qwest.get('blocks.json').then((_, data) => {
            const userColors = {};
            Array.from(new Set(data.nodes.map(node => node.user || null))).forEach((user, idx) => {
                userColors[user] = colors[idx%colors.length]; // Rotate colors
            });

            const nodes = {};
            data.nodes.forEach(node => { nodes[node.id] = node }); // Index by ID

            Graph
                .resetState()
                .nameAccessor(node => `${node.user?node.user+': ':''}${node.description || node.id}`)
                .colorAccessor(node => parseInt(userColors[node.user || null].slice(1), 16))
                .graphData({
                    nodes: nodes,
                    links: data.links.map(link => [link.source, link.target])
                });
        });
    };
    loadBlocks.description = "<em>Blocks</em> data (<a href='https://bl.ocks.org/mbostock/afecf1ce04644ad9036ca146d2084895'>afecf1ce04644ad9036ca146d2084895</a>)";

    //

    const loadD3Dependencies= function(Graph) {
        qwest.get('d3.csv').then((_, csvData) => {
            const { data: [, ...data] } = Papa.parse(csvData); // Parse csv
            data.pop(); // Remove last empty row

            const nodes = {}, links = [], modules = new Set();
            data.forEach(([size, path]) => {
                const levels = path.split('/'),
                    module = levels.length > 1 ? levels[1] : null,
                    leaf = levels.pop(),
                    parent = levels.join('/');

                modules.add(module);

                nodes[path] = {
                    leaf: leaf,
                    module: module,
                    path: path,
                    size: +size || 1
                };

                if (parent) {
                    links.push([parent, path]);
                }
            });

            const moduleColors = {};
            Array.from(modules).forEach((module, idx) => {
                moduleColors[module] = colors[idx%colors.length]; // Rotate colors
            });

            Graph
                .resetState()
                .nodeRelSize(0.5)
                .valAccessor(node => node.size)
                .nameAccessor(node => node.path)
                .colorAccessor(node => parseInt(moduleColors[node.module || null].slice(1), 16))
                .graphData({ nodes: nodes, links: links });
        });
    };
    loadD3Dependencies.description = "<em>D3 dependencies</em> data (<a href='https://bl.ocks.org/mbostock/9a8124ccde3a4e9625bc413b48f14b30'>9a8124ccde3a4e9625bc413b48f14b30</a>)";

    //

    const loadGroups = function(Graph) {
        qwest.get('groups.json').then((_, data) => {
            const nodes = {};

            // add an id property and
            // Index by name
            data.nodes.forEach((node, i) => { 
                node.id = i;
                node.groupLabel =  node.group;
                node.group = Number(node.group.split(' ')[1]) || 0;
                nodes[node.id] = node;
            });

            console.log('data from loadGroups', data);
            console.log('nodes from loadGroups', nodes);

            Graph
                .resetState()
                .nameAccessor(node => node.id)
                .colorAccessor(node => parseInt(colors[node.group%colors.length].slice(1),16))
                .graphData({
                    nodes: nodes,
                    links: data.links.map(link => [link.source, link.target])
                });
        });
    };
    loadGroups.description = "<em>Group Membership</em> data (<a href='http://bl.ocks.org/tomshanley/d3185cf3bde18b223376'>d3185cf3bde18b223376</a>)";

    //

    return [loadGroups, loadMiserables, loadBlocks, loadD3Dependencies];
}

groups.json

{
"nodes":[
{"name":"Agnes Partee","group":"Organisation 1","single":"no"},
{"name":"Ellyn Arzola","group":"Organisation 1","single":"no"},
{"name":"Antone Milazzo","group":"Organisation 1","single":"no"},
{"name":"Francina Schnee","group":"Organisation 1","single":"no"},
{"name":"Lia Fetzer","group":"Organisation 1","single":"no"},
{"name":"Heike Maurice","group":"Organisation 1","single":"no"},
{"name":"Gertrude Hayek","group":"Organisation 1","single":"no"},
{"name":"Aurea Gayer","group":"Organisation 1","single":"no"},
{"name":"Sylvia Pellham","group":"Organisation 1","single":"no"},
{"name":"Katerine Lough","group":"Organisation 1","single":"no"},
{"name":"Ute Moss","group":"Organisation 10","single":"no"},
{"name":"Jerrica Raatz","group":"Organisation 2","single":"no"},
{"name":"Maggie Lamacchia","group":"Organisation 4","single":"no"},
{"name":"Suanne Wesely","group":"Organisation 1","single":"yes"},
{"name":"Ida Golston","group":"Organisation 5","single":"yes"},
{"name":"Danuta Haggett","group":"Organisation 6","single":"yes"},
{"name":"Owen Elms","group":"Organisation 8","single":"yes"},
{"name":"Evelynn Lovin","group":"Organisation 2","single":"yes"},
{"name":"Jacqulyn Demello","group":"Organisation 3","single":"yes"},
{"name":"Fredia Ashbrook","group":"Organisation 7","single":"yes"},
{"name":"Elena Fout","group":"Organisation 3","single":"no"},
{"name":"Porfirio Bengston","group":"Organisation 5","single":"no"},
{"name":"Yi Lounsbury","group":"Organisation 8","single":"no"},
{"name":"Santina Kong","group":"Organisation 4","single":"no"},
{"name":"Juana Krogh","group":"Organisation 1","single":"no"},
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miserables.json

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