Skip to content

Instantly share code, notes, and snippets.

@michaelbarton

michaelbarton/starfish-rake-sge.rb

Created August 12, 2008 15:57
Show Gist options
  • Save michaelbarton/5065 to your computer and use it in GitHub Desktop.
Save michaelbarton/5065 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
starfish-rake-sge.rb
desc 'Loads all the alignment codon data'
task :load_alignment_codons => :clear_alignment_codons do
starfish = %x|which starfish|.strip
loader = PROJECT_ROOT + '/model/starfish/load_alignment_codons.rb'
p = lambda{ system( "qsub -cwd -j y -V #{starfish} #{loader}") }
p.call
sleep(120)
16.times { p.call }
end
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment