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Michael Barton michaelbarton

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michaelbarton / EDAM_topics.tree
Created January 19, 2012 18:28 — forked from robsyme/EDAM_topics.tree
Bioinformatics topics from EDAM (http://voxel.dl.sourceforge.net/project/edamontology/EDAM_beta12.obo)
* Topic
|---+ Biological data resources
| |---+ Laboratory resources
| |---> Microarrays
| |---> Cell culture resources
| +---> Medical informatics resources
| +---+ Biological science resources
|---> Cell biology resources
|---+ Developmental biology resources
| +---> Embryology resources
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michaelbarton / split_file.clj
Created July 22, 2011 21:34 — forked from swannodette/split_file.clj
(use '[clojure.java.io :only [reader]])
(use '[clojure.string :only [split]])
(def read-keys [:id :status :pos-contig :pos-position :pos-strand :neg-contig :neg-position :neg-strand])
(defn split-line [x]
(split x #"\t"))
(defn create-read [x]
(with-meta
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michaelbarton / gist:218613
Created October 26, 2009 12:10 — forked from brianjlandau/gist:176754
# you'd obviously have more settings somewhere
set :scm, :git
set :repository, "[email protected]:defunkt/github.git"
set :branch, "origin/master"
set :migrate_target, :current
set(:latest_release) { fetch(:current_path) }
set(:release_path) { fetch(:current_path) }
set(:current_release) { fetch(:current_path) }
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michaelbarton / mechanize_patch.rb
Created August 27, 2009 00:25 — forked from cee-dub/mechanize_patch.rb
require 'www/mechanize'
# Patches WWW::Mechanize for Cucumber + Webrat
module WWW
class Mechanize
def self.log_disabled
@@log ||= Logger.new(STDOUT)
end
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michaelbarton / example.txt
Created September 8, 2008 08:09 — forked from mndoci/gist:9315
BLAST protein YDL177C
BLAST dna YDL177C