Set up environment for HEP

install-env.sh

#!/usr/bin/env bash

# ** TO USE ROOT, type load_root after all of this has been installed **

# GENERAL SETUP
################

# env usefulness
PYTHON_VERSION="2.7.10"
PY_PAYLOAD="Python-${PYTHON_VERSION}.tgz"
SOFTWARE_PATH=$HOME/software/install

module load Compilers/GCC/4.8.2

# software will live at ~/software/install
mkdir -p ${SOFTWARE_PATH}

# INSTALL SQLITE
#################
cd ${SOFTWARE_PATH}
wget https://www.sqlite.org/2016/sqlite-autoconf-3150000.tar.gz
tar -xzvf sqlite-autoconf-3150000.tar.gz && cd ${SOFTWARE_PATH}/sqlite-autoconf-3150000
./configure --prefix=${SOFTWARE_PATH}
make && make install

# INSTALL PYTHON
################
cd ${SOFTWARE_PATH}/../
wget https://www.python.org/ftp/python/${PYTHON_VERSION}/${PY_PAYLOAD}
tar -xzvf ${PY_PAYLOAD} && cd Python-${PYTHON_VERSION}
LDFLAGS="-L${SOFTWARE_PATH}/lib" ./configure --enable-shared --prefix=${SOFTWARE_PATH} --enable-universalsdk 
make && make install

# Install PIP
wget https://bootstrap.pypa.io/get-pip.py && python get-pip.py --prefix=${SOFTWARE_PATH}

# install essential packages
pip install numpy scipy scikit-learn ipython pandas keras deepdish

# CONFIGURE YOUR PROFILE SETTINGS
##################################

# add the stuff you need to make this work to your ~/.bashrc
cat << 'EOF' >> ~/.bashrc
module load Compilers/GCC/4.8.2

export SOFTWARE_PATH=$HOME/software/install
export PATH=${SOFTWARE_PATH}/bin:$PATH
export LD_LIBRARY_PATH=${SOFTWARE_PATH}/lib:$LD_LIBRARY_PATH
export LD_RUN_PATH=${SOFTWARE_PATH}/lib:$LD_RUN_PATH
export CPATH=${SOFTWARE_PATH}/include:$CPATH

alias load_root='setupATLAS --quiet && lsetup --quiet "root 5.34.25-x86_64-slc6-gcc48-opt"'
EOF

# INSTALL ROOT STUFF 
####################

# load all the path magic from before
source $HOME/.bashrc

# load ROOT!
load_root

# These need ROOT to be up and ready
pip install rootpy root_numpy