Created
May 26, 2011 03:27
-
-
Save mipearson/992489 to your computer and use it in GitHub Desktop.
Failed migrate-3.2.7 run on ubuntu 11.04
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| buntu@ip-10-131-18-9:~/migrate-3.2.7/src$ ./configure --enable-sse2 && make -k | |
| checking build system type... x86_64-unknown-linux-gnu | |
| checking host system type... x86_64-unknown-linux-gnu | |
| checking target system type... x86_64-unknown-linux-gnu | |
| ./configure: line 1912: svn: command not found | |
| ./configure: line 1913: svn: command not found | |
| checking for gmake... make | |
| Linux | |
| =============================== | |
| . | |
| unknown | |
| linux-gnu + + Linux + + | |
| x86_64 | |
| =============================== | |
| checking for gcc... gcc | |
| checking for C compiler default output file name... a.out | |
| checking whether the C compiler works... yes | |
| checking whether we are cross compiling... no | |
| checking for suffix of executables... | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether gcc accepts -g... yes | |
| checking for gcc option to accept ISO C89... none needed | |
| checking for g++... g++ | |
| checking whether we are using the GNU C++ compiler... yes | |
| checking whether g++ accepts -g... yes | |
| +++++++++++++++++++++++++++++++++++++++ | |
| gcc | |
| g++ | |
| -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 | |
| +++++++++++++++++++++++++++++++++++++++ | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking for pthread_create in -lpthread... yes | |
| checking for MPI_Init in -lmpi... no | |
| checking for exp in -lm... yes | |
| checking how to run the C preprocessor... gcc -E | |
| checking for grep that handles long lines and -e... /bin/grep | |
| checking for egrep... /bin/grep -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking limits.h usability... yes | |
| checking limits.h presence... yes | |
| checking for limits.h... yes | |
| checking for strings.h... (cached) yes | |
| checking pthread.h usability... yes | |
| checking pthread.h presence... yes | |
| checking for pthread.h... yes | |
| checking for an ANSI C-conforming const... yes | |
| checking for size_t... yes | |
| checking for int... yes | |
| checking whether struct tm is in sys/time.h or time.h... time.h | |
| checking for inline... inline | |
| checking return type of signal handlers... void | |
| checking for strftime... yes | |
| checking for strcspn... yes | |
| checking for strsep... yes | |
| checking for lgamma... yes | |
| checking which zlib implementation to use... autodetect | |
| checking for main in -lz... yes | |
| checking for gzbuffer... no | |
| Copying source from Mersenne-Twister directory into main source directory | |
| configure: creating ./config.status | |
| config.status: creating Makefile | |
| config.status: creating conf.h | |
| ----------------------------------------------------------------------- | |
| MIGRATE-N is now setup | |
| to compile the program you need to type one of the | |
| commands below (ordered by preference): | |
| SINGLE CPU machines | |
| make # with PDF output support | |
| # this might fail on first attempt, | |
| # if the make fails, please let me know | |
| # often linking fails because the C++ pdf library | |
| # and the core migrate parts (C) mismatch | |
| # check the Makefile line for STDLIB= -lstdc++ | |
| SMP machines more than 1 CPU in machine | |
| make thread # uses the thread library if present | |
| make # on macs running macos 10.6+ using GrandCentral | |
| PARALLEL Computers, Clusters with MPI software | |
| make mpis # each cpu-core can be treated as a node | |
| make mpis-thread # experimental, may increase load per node! | |
| ------------------------------------------------------------------------ | |
| SPEED and other TESTING | |
| make single_short_test #this will run a short test and produce | |
| #a single_short_test.log file showing | |
| #the speed of your machine for a single | |
| # CPU run, send this file to [email protected] | |
| ------------------------------------------------------------------------ | |
| ----------------------------------------------------- | |
| Migrate 3.2.7 | |
| please **read** the documentation | |
| this Makefile will produce an executable: migrate-n | |
| or migrate-n-mpi for the parallel version | |
| For more Makefile options type make help | |
| I am interested in getting email about any problems. | |
| Please send all compile warning or error messages | |
| to [email protected] [Peter Beerli] | |
| ---------------------------------------------------- | |
| make all | |
| make[1]: Entering directory `/home/ubuntu/migrate-3.2.7/src' | |
| (cd ./haru ; make -f makefile.gcc "CC=g++" "CPP=gcc" "ARCH=" "MACOSVERSION=" "MYCPPFLAGS=-DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER ") | |
| make[2]: Entering directory `/home/ubuntu/migrate-3.2.7/src/haru' | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfExceptions.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfList.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfUtils.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfStreams.cc | |
| PdfStreams.cc: In member function ‘size_t PdfMemStream::WriteToStreamDeflate(PdfStreamBase*, PdfEncryptor*)’: | |
| PdfStreams.cc:390:12: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfAutoPtrObjects.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfObjects.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfContents.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfPages.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFonts.cc | |
| PdfFonts.cc: In member function ‘virtual unsigned int PdfType1Font::MeasureText(const char*, double, double, double, double, double*)’: | |
| PdfFonts.cc:270:12: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfXref.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfDestinations.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfOutlines.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfBorderStyle.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfAnnotations.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfDoc.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCatalog.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfInfo.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfEncoding.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFontDef.cc | |
| PdfFontDef.cc: In member function ‘void PdfType1FontDef::LoadFontFile(const char*)’: | |
| PdfFontDef.cc:265:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfXObjects.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFontDef_Courier.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFontDef_Helvetica.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFontDef_Times.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFontDef_Symbol.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfFontDef_ZapfDingbats.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfEncoding_ISO8859.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfEncoding_KOI8.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfEncoding_MSCP.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFonts.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfUnicodeText.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_Gothic.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_Mincyo.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_SimHei.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_SimSun.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_Ming.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_Batang.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfMbFontDef_Dotum.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap_RKSJ.cc | |
| PdfCMap_RKSJ.cc: In function ‘void ParseSJISText(const char*, pdf_byte_type*)’: | |
| PdfCMap_RKSJ.cc:7652:17: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap_EUC.cc | |
| PdfCMap_EUC.cc: In function ‘void ParseEUCText(const char*, pdf_byte_type*)’: | |
| PdfCMap_EUC.cc:7324:17: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap_GB_EUC.cc | |
| PdfCMap_GB_EUC.cc: In member function ‘virtual void PdfCMap_GB_EUC_H::ParseText(const char*, pdf_byte_type*)’: | |
| PdfCMap_GB_EUC.cc:10549:17: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap_ETen_B5.cc | |
| PdfCMap_ETen_B5.cc: In member function ‘virtual void PdfCMap_ETen_B5_H::ParseText(const char*, pdf_byte_type*)’: | |
| PdfCMap_ETen_B5.cc:13175:17: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap_KSCms_UHC.cc | |
| PdfCMap_KSCms_UHC.cc: In member function ‘virtual void PdfCMap_KSCms_UHC_H::ParseText(const char*, pdf_byte_type*)’: | |
| PdfCMap_KSCms_UHC.cc:9183:17: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfCMap_KSC_EUC.cc | |
| PdfCMap_KSC_EUC.cc: In member function ‘virtual void PdfCMap_KSC_EUC_H::ParseText(const char*, pdf_byte_type*)’: | |
| PdfCMap_KSC_EUC.cc:509:17: warning: suggest explicit braces to avoid ambiguous ‘else’ | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfPngImage.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfJpegImage.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c PdfEncrypt.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharuc.cc | |
| libharuc.cc: In function ‘int pdf_cid_type2_fontdef_ascent(void*)’: | |
| libharuc.cc:164:69: warning: converting to non-pointer type ‘long int’ from NULL | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharuc_jpfonts.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharuc_krfonts.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharuc_cnsfonts.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharuc_cntfonts.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharu_png.cc | |
| gcc -I. -Wall -O3 -DNDEBUG -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c libharu_jpeg.cc | |
| ar rc libharu.a PdfExceptions.o PdfList.o PdfUtils.o PdfStreams.o PdfAutoPtrObjects.o PdfObjects.o PdfContents.o PdfPages.o PdfFonts.o PdfXref.o PdfDestinations.o PdfOutlines.o PdfBorderStyle.o PdfAnnotations.o PdfDoc.o PdfCatalog.o PdfInfo.o PdfEncoding.o PdfFontDef.o PdfXObjects.o PdfFontDef_Courier.o PdfFontDef_Helvetica.o PdfFontDef_Times.o PdfFontDef_Symbol.o PdfFontDef_ZapfDingbats.o PdfEncoding_ISO8859.o PdfEncoding_KOI8.o PdfEncoding_MSCP.o PdfMbFonts.o PdfCMap.o PdfUnicodeText.o PdfMbFontDef_Gothic.o PdfMbFontDef_Mincyo.o PdfMbFontDef_SimHei.o PdfMbFontDef_SimSun.o PdfMbFontDef_Ming.o PdfMbFontDef_Batang.o PdfMbFontDef_Dotum.o PdfCMap_RKSJ.o PdfCMap_EUC.o PdfCMap_GB_EUC.o PdfCMap_ETen_B5.o PdfCMap_KSCms_UHC.o PdfCMap_KSC_EUC.o PdfPngImage.o PdfJpegImage.o PdfEncrypt.o libharuc.o libharuc_jpfonts.o libharuc_krfonts.o libharuc_cnsfonts.o libharuc_cntfonts.o libharu_png.o libharu_jpeg.o | |
| ranlib libharu.a | |
| make[2]: Leaving directory `/home/ubuntu/migrate-3.2.7/src/haru' | |
| Using system zlib architecture | |
| make migrate-n "CFLAGS = -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION=\"\\\"\\\"\" -DMIGRATEVERSION=\"\\\"3.2.7\\\"\" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER " "LIBS = -Lharu -lharu -lstdc++ -lz -lm " "LDFLAGS = -fexceptions" | |
| make[2]: Entering directory `/home/ubuntu/migrate-3.2.7/src' | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c aic.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c altivec.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c bayes.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c broyden.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c calculator.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c combroyden2.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c data.c | |
| data.c: In function ‘read_distance_fromfile’: | |
| data.c:1596:24: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c gammalike.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c fst.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c heating.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c histogram.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c inthp.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c joint-chains.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c laguerre.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c lrt.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c main.c | |
| main.c: In function ‘profile_tables’: | |
| main.c:1575:3: warning: implicit declaration of function ‘fprintf2’ | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c migrate_mpi.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c mutationmodel.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c mcmc1.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c mcmc2.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c menu.c | |
| menu.c: In function ‘menuParameters’: | |
| menu.c:1929:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result | |
| menu.c:1978:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result | |
| menu.c:2000:11: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result | |
| menu.c: In function ‘menuInput’: | |
| menu.c:1393:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| menu.c:1402:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c migevents.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c options.c | |
| options.c: In function ‘read_random_mig’: | |
| options.c:5224:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result | |
| options.c: In function ‘read_random_theta’: | |
| options.c:5189:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result | |
| options.c: In function ‘numbercheck’: | |
| options.c:4304:20: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| In file included from /usr/include/string.h:642:0, | |
| from definitions.h:186, | |
| from migration.h:5, | |
| from options.c:30: | |
| In function ‘strcpy’, | |
| inlined from ‘init_options’ at options.c:294:11: | |
| /usr/include/bits/string3.h:105:3: warning: call to __builtin___strcpy_chk will always overflow destination buffer | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c profile.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c random.c | |
| random.c: In function ‘random_seed’: | |
| random.c:454:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c reporter.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c spline.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c tools.c | |
| tools.c: In function ‘read_savesum’: | |
| tools.c:1315:24: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1324:24: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1334:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1342:32: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1353:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1368:40: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1385:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tools.c:1398:24: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c tree.c | |
| tree.c: In function ‘processbracket’: | |
| tree.c:4914:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| tree.c: In function ‘treeread’: | |
| tree.c:4705:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c sequence.c | |
| sequence.c: In function ‘initlambda’: | |
| sequence.c:1424:15: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result | |
| sequence.c: In function ‘inputcategs’: | |
| sequence.c:1335:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| sequence.c:1343:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result | |
| sequence.c: In function ‘initcatn’: | |
| sequence.c:214:15: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c sighandler.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c slice.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c sort.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c uep.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c world.c | |
| world.c: In function ‘print_menu_chain’: | |
| world.c:2022:4: warning: implicit declaration of function ‘fprintf2’ | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c pretty.c | |
| pretty.c: In function ‘pdf_print_tableline’: | |
| pretty.c:3765:13: warning: value computed is not used | |
| pretty.c:3837:13: warning: value computed is not used | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c skyline.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c watterson.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c znzlib.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c pretty-win32.cpp | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -c SFMT.c | |
| gcc -O3 -Wall -funroll-loops -fomit-frame-pointer -falign-loops=16 -Dx86_64 -DNEWVERSION -DBFDEBUG -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -msse2 -DSSE2 -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.2.7\"" -DNOJPEG -DNOPNG -Iharu -DPRETTY -DLETTERPAPER -fexceptions -o migrate-n aic.o altivec.o bayes.o broyden.o calculator.o combroyden2.o data.o gammalike.o fst.o heating.o histogram.o inthp.o joint-chains.o laguerre.o lrt.o main.o migrate_mpi.o mutationmodel.o mcmc1.o mcmc2.o menu.o migevents.o options.o profile.o random.o reporter.o spline.o tools.o tree.o sequence.o sighandler.o slice.o sort.o uep.o world.o pretty.o skyline.o watterson.o znzlib.o pretty-win32.o SFMT.o -Lharu -lharu -lstdc++ -lz -lm ; | |
| make[2]: Leaving directory `/home/ubuntu/migrate-3.2.7/src' | |
| make[1]: Leaving directory `/home/ubuntu/migrate-3.2.7/src' | |
| ubuntu@ip-10-131-18-9:~/migrate-3.2.7/src$ cd ../example/ | |
| ubuntu@ip-10-131-18-9:~/migrate-3.2.7/example$ ../src/migrate-n parmfile.testbayes > /dev/null | |
| *** buffer overflow detected ***: ../src/migrate-n terminated | |
| ======= Backtrace: ========= | |
| /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7f2697d361d7] | |
| /lib/x86_64-linux-gnu/libc.so.6(+0xfd0f0)[0x7f2697d350f0] | |
| ../src/migrate-n[0x477fa4] | |
| ../src/migrate-n[0x45e96c] | |
| /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xff)[0x7f2697c56eff] | |
| ../src/migrate-n[0x402a79] | |
| ======= Memory map: ======== | |
| 00400000-005af000 r-xp 00000000 ca:01 395748 /home/ubuntu/migrate-3.2.7/src/migrate-n | |
| 007af000-007b0000 r--p 001af000 ca:01 395748 /home/ubuntu/migrate-3.2.7/src/migrate-n | |
| 007b0000-007b1000 rw-p 001b0000 ca:01 395748 /home/ubuntu/migrate-3.2.7/src/migrate-n | |
| 007b1000-007b3000 rw-p 00000000 00:00 0 | |
| 026df000-02733000 rw-p 00000000 00:00 0 [heap] | |
| 7f2697c38000-7f2697dc2000 r-xp 00000000 ca:01 134217 /lib/x86_64-linux-gnu/libc-2.13.so | |
| 7f2697dc2000-7f2697fc1000 ---p 0018a000 ca:01 134217 /lib/x86_64-linux-gnu/libc-2.13.so | |
| 7f2697fc1000-7f2697fc5000 r--p 00189000 ca:01 134217 /lib/x86_64-linux-gnu/libc-2.13.so | |
| 7f2697fc5000-7f2697fc6000 rw-p 0018d000 ca:01 134217 /lib/x86_64-linux-gnu/libc-2.13.so | |
| 7f2697fc6000-7f2697fcc000 rw-p 00000000 00:00 0 | |
| 7f2697fcc000-7f2697fe1000 r-xp 00000000 ca:01 134231 /lib/x86_64-linux-gnu/libgcc_s.so.1 | |
| 7f2697fe1000-7f26981e0000 ---p 00015000 ca:01 134231 /lib/x86_64-linux-gnu/libgcc_s.so.1 | |
| 7f26981e0000-7f26981e1000 r--p 00014000 ca:01 134231 /lib/x86_64-linux-gnu/libgcc_s.so.1 | |
| 7f26981e1000-7f26981e2000 rw-p 00015000 ca:01 134231 /lib/x86_64-linux-gnu/libgcc_s.so.1 | |
| 7f26981e2000-7f2698266000 r-xp 00000000 ca:01 134236 /lib/x86_64-linux-gnu/libm-2.13.so | |
| 7f2698266000-7f2698465000 ---p 00084000 ca:01 134236 /lib/x86_64-linux-gnu/libm-2.13.so | |
| 7f2698465000-7f2698466000 r--p 00083000 ca:01 134236 /lib/x86_64-linux-gnu/libm-2.13.so | |
| 7f2698466000-7f2698467000 rw-p 00084000 ca:01 134236 /lib/x86_64-linux-gnu/libm-2.13.so | |
| 7f2698467000-7f269847e000 r-xp 00000000 ca:01 134260 /lib/x86_64-linux-gnu/libz.so.1.2.3.4 | |
| 7f269847e000-7f269867d000 ---p 00017000 ca:01 134260 /lib/x86_64-linux-gnu/libz.so.1.2.3.4 | |
| 7f269867d000-7f269867e000 r--p 00016000 ca:01 134260 /lib/x86_64-linux-gnu/libz.so.1.2.3.4 | |
| 7f269867e000-7f269867f000 rw-p 00017000 ca:01 134260 /lib/x86_64-linux-gnu/libz.so.1.2.3.4 | |
| 7f269867f000-7f2698767000 r-xp 00000000 ca:01 8406 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.14 | |
| 7f2698767000-7f2698966000 ---p 000e8000 ca:01 8406 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.14 | |
| 7f2698966000-7f269896e000 r--p 000e7000 ca:01 8406 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.14 | |
| 7f269896e000-7f2698970000 rw-p 000ef000 ca:01 8406 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.14 | |
| 7f2698970000-7f2698985000 rw-p 00000000 00:00 0 | |
| 7f2698985000-7f26989a6000 r-xp 00000000 ca:01 134210 /lib/x86_64-linux-gnu/ld-2.13.so | |
| 7f2698b99000-7f2698b9e000 rw-p 00000000 00:00 0 | |
| 7f2698ba3000-7f2698ba5000 rw-p 00000000 00:00 0 | |
| 7f2698ba5000-7f2698ba6000 r--p 00020000 ca:01 134210 /lib/x86_64-linux-gnu/ld-2.13.so | |
| 7f2698ba6000-7f2698ba8000 rw-p 00021000 ca:01 134210 /lib/x86_64-linux-gnu/ld-2.13.so | |
| 7fff20dbc000-7fff20ddd000 rw-p 00000000 00:00 0 [stack] | |
| 7fff20dff000-7fff20e00000 r-xp 00000000 00:00 0 [vdso] | |
| ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] | |
| SEVERE ERROR: Input/Output problem! | |
| Most likely a fatal error in the infile or parmfile | |
| Please report error with as much detail as possible to | |
| Peter Beerli <[email protected]> | |
| ubuntu@ip-10-131-18-9:~/migrate-3.2.7/example$ |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment