3D rendering of the results of Tumor Blood Vessels: 3D Tubular Network Analysis

// ImageJ macro

//*** change the window title here, depending on your input image. 
OriginalTitle = "BloodVessels_small.tif";

// following window titles are always same. 
LabelMask = "FastFiltered_Tubeness_LabelMask.tif";
tagged = "FastFiltered_Tubeness_LabelMask_Skeleton_tagged_skeleton.tif";
VisualisationDilation = 2;
Nthreads = 4;

selectWindow( tagged );
run("Macro...", "code=v=(v==127)*127+(v==30)*192+(v==70)*255 stack");
run("3D Fast Filters","filter=Maximum radius_x_pix="+d2s(VisualisationDilation,0)+" radius_y_pix="+d2s(VisualisationDilation,0)+" radius_z_pix="+d2s(VisualisationDilation,0)+" Nb_cpus="+d2s(Nthreads,0));
run("Fire");
rename("ThickSkeleton.tif"); 

run("3D Viewer");
call("ij3d.ImageJ3DViewer.setCoordinateSystem", "false");
call("ij3d.ImageJ3DViewer.add", OriginalTitle, "None", OriginalTitle, "0", "true", "true", "true", "2", "0");
call("ij3d.ImageJ3DViewer.add", LabelMask, "None", LabelMask, "0", "true", "true", "true", "2", "0");
call("ij3d.ImageJ3DViewer.add", "ThickSkeleton.tif", "None", "ThickSkeleton.tif", "0", "true", "true", "true", "2", "0");
call("ij3d.ImageJ3DViewer.startAnimate");