BleachCorrectionTest2023.py

from ij import ImagePlus, IJ
from emblcmci import BleachCorrection

url = "/home/miura/yeastNucleus2DT.tif"
imp = ImagePlus(url)
print imp.getStackSize()

bc = BleachCorrection()

### simple rtio method
#bc.setHeadlessProcessing(True)
#bc.setCorrectionMethod(BleachCorrection.SIMPLE_RATIO)
#bc.setSimpleRatioBaseline(5)

### exponential fit method
bc.setCorrectionMethod(BleachCorrection.EXPONENTIAL_FIT)
bc.setHeadlessProcessing(True)

### Histogram Matching Method
#bc.setCorrectionMethod(BleachCorrection.HISTOGRAM_MATCHING)

impcorrected = bc.doCorrection(imp)

#imp.show()
#impcorrected.show()
print "...done"
IJ.log("... ...done")