Created
November 2, 2012 11:56
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Running OpenMx with multicore
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require(OpenMx) | |
library(parallel) | |
data(demoOneFactor) | |
manifests <- names(demoOneFactor) | |
latents <- c("G") | |
factorModel <- mxModel(name="One Factor", | |
type="RAM", | |
manifestVars = manifests, | |
latentVars = latents, | |
mxPath(from=latents, to=manifests), | |
mxPath(from=manifests, arrows=2), | |
mxPath(from=latents, arrows=2, free=FALSE, values=1.0), | |
mxData(observed=cov(demoOneFactor), type="cov", numObs=500) | |
) | |
# limit to 1 thread for multicore | |
mxOption(NULL, 'Number of Threads', 1) | |
# vary number of observations for data | |
factorFits <- mclapply(seq(500, 1000, by=100), | |
function(obs, model) mxRun(mxModel(model, mxData(observed=cov(demoOneFactor), type="cov", numObs=obs))), | |
model=factorModel, mc.cores=6) |
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