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mja/gatk

Created April 7, 2015 12:22
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gatk command line script
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gatk
#!/bin/sh
java -jar /path/to/GenomeAnalysisTK.jar $@
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mja commented Apr 7, 2015

Edit to point to your copy of GenomeAnalysisTK.jar then put in your $PATH.

Run as

gatk -T <ToolName> [arguments]

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