mjdominus

Mar 15 12:23:13 <\yrlnry>       schacon:  My coworker and I were talking about ticgit today.  I was (mistakenly) looking at your github version and I was pleased at how small it was.  Then he said he thought it was dead, and then we discovered that other people have continued to develop it.  
Mar 15 12:23:32 <\yrlnry>       schacon: How would you characterize the current status of ticgit?  Do you still like it?
Mar 15 12:25:08 <schacon>       i started pulling in some of the newer branches, but the tests they include are somewhat brittle
Mar 15 12:25:14 <schacon>       i've been working on fixing them up
Mar 15 12:26:07 <\yrlnry>       Do you consider it alive?  Are you still using it yourself?  
Mar 15 12:26:15 <schacon>       jeffWelling fork is probably the best
Mar 15 12:26:45 <schacon>       i don't currently use it much, but a lot of people do and i've been starting to work on it again
Mar 15 12:27:06 <\yrlnry>       If you were starting today, would you prefer the jeffWelling fork of ticgit, or would y

mjdominus

• Overview

I have a bunch of classes that represent email filters, and are backed by a legacy database. The interface to the legacy database is through DBIx::Class. A filter is essentially two things: a condition and an action. An email message is passed to the condition object, which reports whether the condition is satisfied; if so, the message is passed to the action object, which performs some action, possibly modifying the message. The legacy database principally involves two tables: mh_conds, representing conditions, and mh_actions, representing actions.

I have code that examines the tables using DBIx::Class and constructs Filter objects, and also code for the reverse direction: you can manufacture a Filter object, including its subsidiary Condition and Action objects, and then store it into the database.

The storage code is peculiar. The way it works is that Condition and Action objects each have an as_rows method, which returns a list of DBIx::Class::Row objects. To i

mjdominus

Little-used features list:

	-P option
	-u option
	dump
	...
	.. in scalar context
	formats:
	    in general
	    $: to control line breaking in a ^.... field

mjdominus

                String query = "select distinct a.tree.rootNode "
                        +
                        // Find the trees with three nodes a, b, and c, such that...
                        "from PhyloTreeNode as a, PhyloTreeNode as b, PhyloTreeNode as c, "
                        +
                        // There's a node "ab" (which will be an ancestor of both a and b)
                        "PhyloTreeNode as ab "
                        +
                        // All four nodes are in the same tree
                        "where a.tree = b.tree " + "and a.tree = c.tree " + "and a.tree = ab.tree "

mjdominus

sub choose {
  my ($n, $k) = @_;
  return 1 if $k == 0;
  return 0 if $n == 0;
  return choose($n-1, $k-1) * $n / $k;
}

sub pow5 {
  my ($k) = @_;
  my $p = 1;

mjdominus

choose _ 0 = 1
choose 0 _ = 0
choose n k = choose (n-1) (k-1) *	n `div` k

pow n 0 = 1
pow n k	= n * pow n (k-1)

fib n = theSum `div` pow2
  where theSum = sum [ (choose n (2*k+1)) * (pow 5 k) |
                        k <- [0 .. div (n-1) 2] ]

mjdominus

sub minotaur_is_here {
    local(@parts) = ('poetry',
                     'arms', 'legs', 'head', 'nose', 'thumbs',
                     'ears', 'hair', 'skin', 'eyelids', 'face',
                     );
    local($part) = $parts[int(rand(@parts))];

    $HEREDESC .= "The MINOTAUR is here!  ";
    if ($part eq 'poetry') {

mjdominus

#!/usr/bin/perl

use Date::Calc ':all';

my @ARG;
if (@ARGV) {
  if ($ARGV[0] =~ /^(\d{4})-?(\d{2})-?(\d{2})$/) {
    @ARG = ($1, $2, $3);
  } else {
    my $d = time() + shift() * 86400;

mjdominus

	public Set<PhyloTree> findByTopology3(TaxonVariant a, TaxonVariant b, TaxonVariant c) {
		Set<PhyloTree> returnVal = new HashSet<PhyloTree>();
				
		Set<TaxonVariant> aTV = getTaxonLabelHome().expandTaxonVariant(a);
		Set<TaxonVariant> bTV = getTaxonLabelHome().expandTaxonVariant(b);
		Set<TaxonVariant> cTV = getTaxonLabelHome().expandTaxonVariant(c);
		
		if (aTV.isEmpty() || bTV.isEmpty() || cTV.isEmpty()) {
			// XXX This avoids a query syntax error later on but maybe isn't
			// the best behavior.

mjdominus

# Author: John Tromp <[email protected]>
# http://homepages.cwi.nl/~tromp/cl/cl.html
$|=1; $i=
sub{my$s=                  shift;
sub{                       shift->(
sub{my$n=                  shift;sub{$n}})->($s)}};$y=
sub{my$a=                  shift;my$q=
sub{my$t=                  shift;$a->(
sub{            $t->($t)->(shift)})};$q->($q)};$y->(
sub{my$a=                  shift;