requirejs+flight

gistfile1.js

// requirejs config in main.js
require.config({
  paths: {
    jquery: 'components/jquery/jquery',
    es5shim: 'components/es5-shim/es5-shim',
    es5sham: 'components/es5-shim/es5-sham'
  },
  map: {
    '*': {
      'flight/component': 'components/flight/lib/component',
    }
  },
  shim: {
    'components/flight/lib/index': {
      deps: ['jquery', 'es5shim', 'es5sham']
    },
    'app/js/app': {
      deps: ['components/flight/lib/index']
    }
  }
});

require(['app/js/app'], function (App) {
  App.initialize();
});

for layout:

▾ app/
▸ css/
▾ js/
app.js
▾ components/
▸ es5-shim/
▸ flight/
▸ jquery/
▸ requirejs/
index.html
main.js