Created
November 10, 2015 23:05
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| * index (vg_index:main) (failed) job-Bk01J1Q0QpJ6F3BZv5ZyjBBq | |
| mlin 2015-11-08 19:44:06 (runtime 12:57:05) | |
| 2015-11-09 11:33:40 index ALERT This job has been restarted due to UnresponsiveWorker from running this job | |
| 2015-11-09 11:33:49 index INFO Logging initialized (priority) | |
| 2015-11-09 11:33:50 index INFO Downloading bundled file gcc4.9_runtime_debs.tar | |
| 2015-11-09 11:33:51 index STDOUT >>> Unpacking gcc4.9_runtime_debs.tar to / | |
| 2015-11-09 11:33:51 index INFO Downloading bundled file vg_bundle.tar.gz | |
| 2015-11-09 11:33:52 index STDOUT >>> Unpacking vg_bundle.tar.gz to / | |
| 2015-11-09 11:33:53 index INFO Installing apt packages libjansson4, dx-toolkit | |
| 2015-11-09 11:33:57 index INFO Setting SSH public key | |
| 2015-11-09 11:33:57 index STDOUT dxpy/0.168.0 (Linux-3.13.0-66-generic-x86_64-with-Ubuntu-12.04-precise) | |
| 2015-11-09 11:33:58 index STDOUT bash running (job ID job-Bk01J1Q0QpJ6F3BZv5ZyjBBq) | |
| 2015-11-09 11:33:58 index STDERR + sudo dpkg -i /tmp/dx_deb_bundle/gcc-4.9-base_4.9.2-0ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/gcc-5-base_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libasan1_4.9.2-0ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libatomic1_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libcilkrts5_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libgcc1_1%3a5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libgcc-4.9-dev_4.9.2-0ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libgomp1_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libitm1_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/liblsan0_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libquadmath0_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libstdc++-4.9-dev_4.9.2-0ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libstdc++6_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libtsan0_5.2.1-23ubuntu1~12.04_amd64.deb /tmp/dx_deb_bundle/libubsan0_5.2.1-23ubuntu1~12.04_amd64.deb | |
| 2015-11-09 11:33:58 index STDOUT Selecting previously unselected package gcc-4.9-base. | |
| 2015-11-09 11:33:58 index STDOUT (Reading database ... 94745 files and directories currently installed.) | |
| 2015-11-09 11:33:58 index STDOUT Unpacking gcc-4.9-base (from .../gcc-4.9-base_4.9.2-0ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:58 index STDOUT Selecting previously unselected package gcc-5-base. | |
| 2015-11-09 11:33:58 index STDOUT Unpacking gcc-5-base (from .../gcc-5-base_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:58 index STDOUT Selecting previously unselected package libasan1. | |
| 2015-11-09 11:33:58 index STDOUT Unpacking libasan1 (from .../libasan1_4.9.2-0ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Selecting previously unselected package libatomic1. | |
| 2015-11-09 11:33:59 index STDOUT Unpacking libatomic1 (from .../libatomic1_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Selecting previously unselected package libcilkrts5. | |
| 2015-11-09 11:33:59 index STDOUT Unpacking libcilkrts5 (from .../libcilkrts5_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Preparing to replace libgcc1 1:4.6.3-1ubuntu5 (using .../libgcc1_1%3a5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Unpacking replacement libgcc1 ... | |
| 2015-11-09 11:33:59 index STDOUT Selecting previously unselected package libgcc-4.9-dev. | |
| 2015-11-09 11:33:59 index STDOUT Unpacking libgcc-4.9-dev (from .../libgcc-4.9-dev_4.9.2-0ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Preparing to replace libgomp1 4.6.3-1ubuntu5 (using .../libgomp1_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Unpacking replacement libgomp1 ... | |
| 2015-11-09 11:33:59 index STDOUT Selecting previously unselected package libitm1. | |
| 2015-11-09 11:33:59 index STDOUT Unpacking libitm1 (from .../libitm1_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Selecting previously unselected package liblsan0. | |
| 2015-11-09 11:33:59 index STDOUT Unpacking liblsan0 (from .../liblsan0_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Preparing to replace libquadmath0 4.6.3-1ubuntu5 (using .../libquadmath0_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:33:59 index STDOUT Unpacking replacement libquadmath0 ... | |
| 2015-11-09 11:33:59 index STDOUT Selecting previously unselected package libstdc++-4.9-dev. | |
| 2015-11-09 11:33:59 index STDOUT Unpacking libstdc++-4.9-dev (from .../libstdc++-4.9-dev_4.9.2-0ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:34:00 index STDOUT Preparing to replace libstdc++6 4.6.3-1ubuntu5 (using .../libstdc++6_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:34:00 index STDOUT Unpacking replacement libstdc++6 ... | |
| 2015-11-09 11:34:00 index STDOUT Selecting previously unselected package libtsan0. | |
| 2015-11-09 11:34:00 index STDOUT Unpacking libtsan0 (from .../libtsan0_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:34:00 index STDOUT Selecting previously unselected package libubsan0. | |
| 2015-11-09 11:34:00 index STDOUT Unpacking libubsan0 (from .../libubsan0_5.2.1-23ubuntu1~12.04_amd64.deb) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up gcc-4.9-base (4.9.2-0ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up gcc-5-base (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libatomic1 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libgcc1 (1:5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libgomp1 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libitm1 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libquadmath0 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libstdc++6 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libtsan0 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libubsan0 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libasan1 (4.9.2-0ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libcilkrts5 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up liblsan0 (5.2.1-23ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libgcc-4.9-dev (4.9.2-0ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Setting up libstdc++-4.9-dev (4.9.2-0ubuntu1~12.04) ... | |
| 2015-11-09 11:34:00 index STDOUT Processing triggers for libc-bin ... | |
| 2015-11-09 11:34:00 index STDOUT ldconfig deferred processing now taking place | |
| 2015-11-09 11:34:00 index STDERR + dx cat '{"$dnanexus_link": "file-Bk0GfZ00F7GyXk9qVkq1bZb9"}' | |
| 2015-11-09 11:34:00 index STDERR + tar vx | |
| 2015-11-09 11:34:01 index STDOUT vg/ | |
| 2015-11-09 11:34:01 index STDOUT vg/1.vg | |
| 2015-11-09 11:34:07 index STDOUT vg/2.vg | |
| 2015-11-09 11:34:16 index STDOUT vg/3.vg | |
| 2015-11-09 11:34:17 index STDOUT vg/4.vg | |
| 2015-11-09 11:34:18 index STDOUT vg/5.vg | |
| 2015-11-09 11:34:19 index STDOUT vg/6.vg | |
| 2015-11-09 11:34:19 index STDOUT vg/7.vg | |
| 2015-11-09 11:34:20 index STDOUT vg/8.vg | |
| 2015-11-09 11:34:21 index STDOUT vg/9.vg | |
| 2015-11-09 11:34:22 index STDOUT vg/10.vg | |
| 2015-11-09 11:34:22 index STDOUT vg/11.vg | |
| 2015-11-09 11:34:23 index STDOUT vg/12.vg | |
| 2015-11-09 11:34:24 index STDOUT vg/13.vg | |
| 2015-11-09 11:34:24 index STDOUT vg/14.vg | |
| 2015-11-09 11:34:24 index STDOUT vg/15.vg | |
| 2015-11-09 11:34:25 index STDOUT vg/16.vg | |
| 2015-11-09 11:34:25 index STDOUT vg/17.vg | |
| 2015-11-09 11:34:25 index STDOUT vg/18.vg | |
| 2015-11-09 11:34:25 index STDOUT vg/19.vg | |
| 2015-11-09 11:34:26 index STDOUT vg/20.vg | |
| 2015-11-09 11:34:26 index STDOUT vg/21.vg | |
| 2015-11-09 11:34:26 index STDOUT vg/22.vg | |
| 2015-11-09 11:34:26 index STDOUT vg/X.vg | |
| 2015-11-09 11:34:27 index STDOUT vg/Y.vg | |
| 2015-11-09 11:34:27 index STDERR + pushd vg | |
| 2015-11-09 11:34:27 index STDOUT ~/vg ~ | |
| 2015-11-09 11:34:27 index STDERR ++ ls -1 10.vg 11.vg 12.vg 13.vg 14.vg 15.vg 16.vg 17.vg 18.vg 19.vg 1.vg 20.vg 21.vg 22.vg 2.vg 3.vg 4.vg 5.vg 6.vg 7.vg 8.vg 9.vg X.vg Y.vg | |
| 2015-11-09 11:34:27 index STDERR + vg index -x index.xg 10.vg 11.vg 12.vg 13.vg 14.vg 15.vg 16.vg 17.vg 18.vg 19.vg 1.vg 20.vg 21.vg 22.vg 2.vg 3.vg 4.vg 5.vg 6.vg 7.vg 8.vg 9.vg X.vg Y.vg | |
| 2015-11-09 11:43:50 index INFO CPU: 3% (32 cores) * Memory: 95958/245998MB * Storage: 586GB free * Net: 7↓/0↑MBps | |
| 2015-11-09 11:53:50 index INFO CPU: 3% (32 cores) * Memory: 188471/245998MB * Storage: 586GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 12:03:50 index INFO CPU: 2% (32 cores) * Memory: 182897/245998MB * Storage: 586GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 12:13:50 index INFO CPU: 3% (32 cores) * Memory: 185431/245998MB * Storage: 586GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 12:23:50 index INFO CPU: 3% (32 cores) * Memory: 193632/245998MB * Storage: 586GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 12:33:50 index INFO CPU: 2% (32 cores) * Memory: 193633/245998MB * Storage: 586GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 12:42:16 index STDERR + mkdir -p /tmp/dxvg | |
| 2015-11-09 12:42:16 index STDERR + graphs= | |
| 2015-11-09 12:42:16 index STDERR ++ ls -1 10.vg 11.vg 12.vg 13.vg 14.vg 15.vg 16.vg 17.vg 18.vg 19.vg 1.vg 20.vg 21.vg 22.vg 2.vg 3.vg 4.vg 5.vg 6.vg 7.vg 8.vg 9.vg X.vg Y.vg | |
| 2015-11-09 12:42:16 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 12:42:16 index STDERR + seqname=10 | |
| 2015-11-09 12:42:16 index STDERR + graphs=' /tmp/dxvg/10' | |
| 2015-11-09 12:42:16 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 12:42:16 index STDERR ++ nproc | |
| 2015-11-09 12:42:16 index STDERR + vg mod -p -t 32 -l 16 -e 3 10.vg | |
| 2015-11-09 12:43:50 index INFO CPU: 5% (32 cores) * Memory: 24056/245998MB * Storage: 578GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 12:50:39 index STDERR ++ nproc | |
| 2015-11-09 12:50:39 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/10.mod.vg | |
| 2015-11-09 12:53:50 index INFO CPU: 11% (32 cores) * Memory: 23681/245998MB * Storage: 578GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 13:03:50 index INFO CPU: 36% (32 cores) * Memory: 65375/245998MB * Storage: 578GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 13:10:52 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 13:10:52 index STDERR + seqname=11 | |
| 2015-11-09 13:10:52 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11' | |
| 2015-11-09 13:10:52 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 13:10:52 index STDERR ++ nproc | |
| 2015-11-09 13:10:52 index STDERR + vg mod -p -t 32 -l 16 -e 3 11.vg | |
| 2015-11-09 13:13:50 index INFO CPU: 21% (32 cores) * Memory: 25332/245998MB * Storage: 573GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 13:19:11 index STDERR ++ nproc | |
| 2015-11-09 13:19:11 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/11.mod.vg | |
| 2015-11-09 13:23:50 index INFO CPU: 16% (32 cores) * Memory: 30160/245998MB * Storage: 573GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 13:39:09 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 13:39:09 index STDERR + seqname=12 | |
| 2015-11-09 13:39:09 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12' | |
| 2015-11-09 13:39:09 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 13:39:09 index STDERR ++ nproc | |
| 2015-11-09 13:39:09 index STDERR + vg mod -p -t 32 -l 16 -e 3 12.vg | |
| 2015-11-09 13:43:50 index INFO CPU: 18% (32 cores) * Memory: 32955/245998MB * Storage: 568GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 13:47:00 index STDERR ++ nproc | |
| 2015-11-09 13:47:00 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/12.mod.vg | |
| 2015-11-09 13:53:50 index INFO CPU: 25% (32 cores) * Memory: 39645/245998MB * Storage: 568GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 14:03:50 index INFO CPU: 36% (32 cores) * Memory: 81887/245998MB * Storage: 568GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 14:06:18 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 14:06:18 index STDERR + seqname=13 | |
| 2015-11-09 14:06:18 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13' | |
| 2015-11-09 14:06:18 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 14:06:18 index STDERR ++ nproc | |
| 2015-11-09 14:06:18 index STDERR + vg mod -p -t 32 -l 16 -e 3 13.vg | |
| 2015-11-09 14:12:25 index STDERR ++ nproc | |
| 2015-11-09 14:12:25 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/13.mod.vg | |
| 2015-11-09 14:13:50 index INFO CPU: 13% (32 cores) * Memory: 15311/245998MB * Storage: 564GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 14:23:50 index INFO CPU: 36% (32 cores) * Memory: 57559/245998MB * Storage: 564GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 14:28:02 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 14:28:02 index STDERR + seqname=14 | |
| 2015-11-09 14:28:02 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14' | |
| 2015-11-09 14:28:02 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 14:28:02 index STDERR ++ nproc | |
| 2015-11-09 14:28:02 index STDERR + vg mod -p -t 32 -l 16 -e 3 14.vg | |
| 2015-11-09 14:33:32 index STDERR ++ nproc | |
| 2015-11-09 14:33:32 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/14.mod.vg | |
| 2015-11-09 14:33:50 index INFO CPU: 16% (32 cores) * Memory: 7501/245998MB * Storage: 560GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 14:43:50 index INFO CPU: 33% (32 cores) * Memory: 52168/245998MB * Storage: 560GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 14:48:20 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 14:48:20 index STDERR + seqname=15 | |
| 2015-11-09 14:48:20 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15' | |
| 2015-11-09 14:48:20 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 14:48:20 index STDERR ++ nproc | |
| 2015-11-09 14:48:20 index STDERR + vg mod -p -t 32 -l 16 -e 3 15.vg | |
| 2015-11-09 14:53:10 index STDERR ++ nproc | |
| 2015-11-09 14:53:10 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/15.mod.vg | |
| 2015-11-09 14:53:50 index INFO CPU: 15% (32 cores) * Memory: 11531/245998MB * Storage: 556GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:03:50 index INFO CPU: 41% (32 cores) * Memory: 53105/245998MB * Storage: 556GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:06:55 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 15:06:55 index STDERR + seqname=16 | |
| 2015-11-09 15:06:55 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16' | |
| 2015-11-09 15:06:55 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 15:06:55 index STDERR ++ nproc | |
| 2015-11-09 15:06:55 index STDERR + vg mod -p -t 32 -l 16 -e 3 16.vg | |
| 2015-11-09 15:12:32 index STDERR ++ nproc | |
| 2015-11-09 15:12:32 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/16.mod.vg | |
| 2015-11-09 15:13:50 index INFO CPU: 12% (32 cores) * Memory: 13086/245998MB * Storage: 552GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:23:50 index INFO CPU: 38% (32 cores) * Memory: 54156/245998MB * Storage: 552GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:26:22 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 15:26:22 index STDERR + seqname=17 | |
| 2015-11-09 15:26:22 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17' | |
| 2015-11-09 15:26:22 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 15:26:22 index STDERR ++ nproc | |
| 2015-11-09 15:26:22 index STDERR + vg mod -p -t 32 -l 16 -e 3 17.vg | |
| 2015-11-09 15:31:07 index STDERR ++ nproc | |
| 2015-11-09 15:31:07 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/17.mod.vg | |
| 2015-11-09 15:33:50 index INFO CPU: 17% (32 cores) * Memory: 20338/245998MB * Storage: 549GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:42:44 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 15:42:44 index STDERR + seqname=18 | |
| 2015-11-09 15:42:44 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18' | |
| 2015-11-09 15:42:44 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 15:42:44 index STDERR ++ nproc | |
| 2015-11-09 15:42:44 index STDERR + vg mod -p -t 32 -l 16 -e 3 18.vg | |
| 2015-11-09 15:43:50 index INFO CPU: 32% (32 cores) * Memory: 15319/245998MB * Storage: 546GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:47:13 index STDERR ++ nproc | |
| 2015-11-09 15:47:13 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/18.mod.vg | |
| 2015-11-09 15:53:50 index INFO CPU: 25% (32 cores) * Memory: 37136/245998MB * Storage: 546GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 15:58:32 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 15:58:32 index STDERR + seqname=19 | |
| 2015-11-09 15:58:32 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19' | |
| 2015-11-09 15:58:32 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 15:58:32 index STDERR ++ nproc | |
| 2015-11-09 15:58:32 index STDERR + vg mod -p -t 32 -l 16 -e 3 19.vg | |
| 2015-11-09 16:02:06 index STDERR ++ nproc | |
| 2015-11-09 16:02:06 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/19.mod.vg | |
| 2015-11-09 16:03:50 index INFO CPU: 20% (32 cores) * Memory: 14821/245998MB * Storage: 543GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 16:10:52 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 16:10:52 index STDERR + seqname=1 | |
| 2015-11-09 16:10:52 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1' | |
| 2015-11-09 16:10:52 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 16:10:52 index STDERR ++ nproc | |
| 2015-11-09 16:10:52 index STDERR + vg mod -p -t 32 -l 16 -e 3 1.vg | |
| 2015-11-09 16:13:50 index INFO CPU: 30% (32 cores) * Memory: 36210/245998MB * Storage: 541GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 16:23:50 index INFO CPU: 3% (32 cores) * Memory: 41106/245998MB * Storage: 541GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 16:25:27 index STDERR ++ nproc | |
| 2015-11-09 16:25:27 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/1.mod.vg | |
| 2015-11-09 16:33:50 index INFO CPU: 25% (32 cores) * Memory: 47950/245998MB * Storage: 541GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 16:43:50 index INFO CPU: 34% (32 cores) * Memory: 89068/245998MB * Storage: 541GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 16:53:50 index INFO CPU: 39% (32 cores) * Memory: 129894/245998MB * Storage: 541GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 17:01:09 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 17:01:09 index STDERR + seqname=20 | |
| 2015-11-09 17:01:09 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20' | |
| 2015-11-09 17:01:09 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 17:01:09 index STDERR ++ nproc | |
| 2015-11-09 17:01:09 index STDERR + vg mod -p -t 32 -l 16 -e 3 20.vg | |
| 2015-11-09 17:03:50 index INFO CPU: 25% (32 cores) * Memory: 14422/245998MB * Storage: 533GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 17:04:38 index STDERR ++ nproc | |
| 2015-11-09 17:04:38 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/20.mod.vg | |
| 2015-11-09 17:13:34 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 17:13:34 index STDERR + seqname=21 | |
| 2015-11-09 17:13:34 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21' | |
| 2015-11-09 17:13:34 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 17:13:34 index STDERR ++ nproc | |
| 2015-11-09 17:13:34 index STDERR + vg mod -p -t 32 -l 16 -e 3 21.vg | |
| 2015-11-09 17:13:50 index INFO CPU: 35% (32 cores) * Memory: 10063/245998MB * Storage: 533GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 17:15:38 index STDERR ++ nproc | |
| 2015-11-09 17:15:38 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/21.mod.vg | |
| 2015-11-09 17:21:50 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 17:21:50 index STDERR + seqname=22 | |
| 2015-11-09 17:21:50 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22' | |
| 2015-11-09 17:21:50 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 17:21:50 index STDERR ++ nproc | |
| 2015-11-09 17:21:50 index STDERR + vg mod -p -t 32 -l 16 -e 3 22.vg | |
| 2015-11-09 17:23:50 index INFO CPU: 26% (32 cores) * Memory: 11013/245998MB * Storage: 529GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 17:23:55 index STDERR ++ nproc | |
| 2015-11-09 17:23:55 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/22.mod.vg | |
| 2015-11-09 17:30:23 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 17:30:23 index STDERR + seqname=2 | |
| 2015-11-09 17:30:23 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2' | |
| 2015-11-09 17:30:23 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 17:30:23 index STDERR ++ nproc | |
| 2015-11-09 17:30:23 index STDERR + vg mod -p -t 32 -l 16 -e 3 2.vg | |
| 2015-11-09 17:33:50 index INFO CPU: 30% (32 cores) * Memory: 37604/245998MB * Storage: 527GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 17:43:50 index INFO CPU: 3% (32 cores) * Memory: 43096/245998MB * Storage: 527GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 17:45:54 index STDERR ++ nproc | |
| 2015-11-09 17:45:54 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/2.mod.vg | |
| 2015-11-09 17:53:50 index INFO CPU: 20% (32 cores) * Memory: 47284/245998MB * Storage: 527GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 18:03:50 index INFO CPU: 36% (32 cores) * Memory: 88792/245998MB * Storage: 527GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 18:13:50 index INFO CPU: 36% (32 cores) * Memory: 131164/245998MB * Storage: 527GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 18:21:40 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 18:21:40 index STDERR + seqname=3 | |
| 2015-11-09 18:21:40 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3' | |
| 2015-11-09 18:21:40 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 18:21:40 index STDERR ++ nproc | |
| 2015-11-09 18:21:40 index STDERR + vg mod -p -t 32 -l 16 -e 3 3.vg | |
| 2015-11-09 18:23:50 index INFO CPU: 30% (32 cores) * Memory: 33452/245998MB * Storage: 518GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 18:33:50 index INFO CPU: 5% (32 cores) * Memory: 22411/245998MB * Storage: 518GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 18:34:35 index STDERR ++ nproc | |
| 2015-11-09 18:34:35 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/3.mod.vg | |
| 2015-11-09 18:43:50 index INFO CPU: 22% (32 cores) * Memory: 50747/245998MB * Storage: 518GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 18:53:50 index INFO CPU: 27% (32 cores) * Memory: 90986/245998MB * Storage: 518GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:03:50 index INFO CPU: 28% (32 cores) * Memory: 131803/245998MB * Storage: 518GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:05:23 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 19:05:23 index STDERR + seqname=4 | |
| 2015-11-09 19:05:23 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4' | |
| 2015-11-09 19:05:23 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 19:05:23 index STDERR ++ nproc | |
| 2015-11-09 19:05:23 index STDERR + vg mod -p -t 32 -l 16 -e 3 4.vg | |
| 2015-11-09 19:13:50 index INFO CPU: 8% (32 cores) * Memory: 24816/245998MB * Storage: 511GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:17:46 index STDERR ++ nproc | |
| 2015-11-09 19:17:46 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/4.mod.vg | |
| 2015-11-09 19:23:50 index INFO CPU: 14% (32 cores) * Memory: 36913/245998MB * Storage: 511GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:33:50 index INFO CPU: 29% (32 cores) * Memory: 78354/245998MB * Storage: 511GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:43:50 index INFO CPU: 27% (32 cores) * Memory: 119470/245998MB * Storage: 511GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:47:35 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 19:47:35 index STDERR + seqname=5 | |
| 2015-11-09 19:47:35 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5' | |
| 2015-11-09 19:47:35 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 19:47:35 index STDERR ++ nproc | |
| 2015-11-09 19:47:35 index STDERR + vg mod -p -t 32 -l 16 -e 3 5.vg | |
| 2015-11-09 19:53:50 index INFO CPU: 14% (32 cores) * Memory: 43188/245998MB * Storage: 504GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 19:58:58 index STDERR ++ nproc | |
| 2015-11-09 19:58:58 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/5.mod.vg | |
| 2015-11-09 20:03:50 index INFO CPU: 14% (32 cores) * Memory: 30973/245998MB * Storage: 504GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 20:13:50 index INFO CPU: 40% (32 cores) * Memory: 73421/245998MB * Storage: 504GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 20:23:50 index INFO CPU: 34% (32 cores) * Memory: 114984/245998MB * Storage: 504GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 20:25:50 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 20:25:50 index STDERR + seqname=6 | |
| 2015-11-09 20:25:50 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6' | |
| 2015-11-09 20:25:50 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 20:25:50 index STDERR ++ nproc | |
| 2015-11-09 20:25:50 index STDERR + vg mod -p -t 32 -l 16 -e 3 6.vg | |
| 2015-11-09 20:33:50 index INFO CPU: 11% (32 cores) * Memory: 29515/245998MB * Storage: 497GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 20:36:30 index STDERR ++ nproc | |
| 2015-11-09 20:36:30 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/6.mod.vg | |
| 2015-11-09 20:43:50 index INFO CPU: 25% (32 cores) * Memory: 44050/245998MB * Storage: 497GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 20:53:50 index INFO CPU: 38% (32 cores) * Memory: 86218/245998MB * Storage: 497GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 21:01:37 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 21:01:37 index STDERR + seqname=7 | |
| 2015-11-09 21:01:37 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6 /tmp/dxvg/7' | |
| 2015-11-09 21:01:37 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 21:01:37 index STDERR ++ nproc | |
| 2015-11-09 21:01:37 index STDERR + vg mod -p -t 32 -l 16 -e 3 7.vg | |
| 2015-11-09 21:03:50 index INFO CPU: 22% (32 cores) * Memory: 26778/245998MB * Storage: 491GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 21:12:17 index STDERR ++ nproc | |
| 2015-11-09 21:12:17 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/7.mod.vg | |
| 2015-11-09 21:13:50 index INFO CPU: 6% (32 cores) * Memory: 19648/245998MB * Storage: 491GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 21:23:50 index INFO CPU: 35% (32 cores) * Memory: 60818/245998MB * Storage: 491GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 21:33:50 index INFO CPU: 33% (32 cores) * Memory: 102618/245998MB * Storage: 491GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 21:35:46 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 21:35:46 index STDERR + seqname=8 | |
| 2015-11-09 21:35:46 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6 /tmp/dxvg/7 /tmp/dxvg/8' | |
| 2015-11-09 21:35:46 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 21:35:46 index STDERR ++ nproc | |
| 2015-11-09 21:35:46 index STDERR + vg mod -p -t 32 -l 16 -e 3 8.vg | |
| 2015-11-09 21:43:50 index INFO CPU: 9% (32 cores) * Memory: 29842/245998MB * Storage: 485GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 21:45:41 index STDERR ++ nproc | |
| 2015-11-09 21:45:41 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/8.mod.vg | |
| 2015-11-09 21:53:50 index INFO CPU: 25% (32 cores) * Memory: 46268/245998MB * Storage: 485GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 22:03:50 index INFO CPU: 38% (32 cores) * Memory: 88822/245998MB * Storage: 485GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 22:07:47 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 22:07:47 index STDERR + seqname=9 | |
| 2015-11-09 22:07:47 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6 /tmp/dxvg/7 /tmp/dxvg/8 /tmp/dxvg/9' | |
| 2015-11-09 22:07:47 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 22:07:47 index STDERR ++ nproc | |
| 2015-11-09 22:07:47 index STDERR + vg mod -p -t 32 -l 16 -e 3 9.vg | |
| 2015-11-09 22:13:50 index INFO CPU: 14% (32 cores) * Memory: 24438/245998MB * Storage: 480GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 22:15:24 index STDERR ++ nproc | |
| 2015-11-09 22:15:24 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/9.mod.vg | |
| 2015-11-09 22:23:50 index INFO CPU: 34% (32 cores) * Memory: 45764/245998MB * Storage: 480GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 22:33:50 index INFO CPU: 38% (32 cores) * Memory: 87348/245998MB * Storage: 480GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 22:34:41 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 22:34:41 index STDERR + seqname=X | |
| 2015-11-09 22:34:41 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6 /tmp/dxvg/7 /tmp/dxvg/8 /tmp/dxvg/9 /tmp/dxvg/X' | |
| 2015-11-09 22:34:41 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 22:34:41 index STDERR ++ nproc | |
| 2015-11-09 22:34:41 index STDERR + vg mod -p -t 32 -l 16 -e 3 X.vg | |
| 2015-11-09 22:42:01 index STDERR ++ nproc | |
| 2015-11-09 22:42:01 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/X.mod.vg | |
| 2015-11-09 22:43:50 index INFO CPU: 12% (32 cores) * Memory: 18770/245998MB * Storage: 475GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 22:53:50 index INFO CPU: 41% (32 cores) * Memory: 61112/245998MB * Storage: 475GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 23:01:30 index STDERR + for vgfn in '$(ls -1 *.vg)' | |
| 2015-11-09 23:01:30 index STDERR + seqname=Y | |
| 2015-11-09 23:01:30 index STDERR + graphs=' /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6 /tmp/dxvg/7 /tmp/dxvg/8 /tmp/dxvg/9 /tmp/dxvg/X /tmp/dxvg/Y' | |
| 2015-11-09 23:01:30 index STDERR + vg mod -S -l 100 - | |
| 2015-11-09 23:01:30 index STDERR ++ nproc | |
| 2015-11-09 23:01:30 index STDERR + vg mod -p -t 32 -l 16 -e 3 Y.vg | |
| 2015-11-09 23:02:15 index STDERR ++ nproc | |
| 2015-11-09 23:02:15 index STDERR + vg kmers -gB -t 32 -H 1000000000 -T 1000000001 -k 16 -F /tmp/dxvg/Y.mod.vg | |
| 2015-11-09 23:03:50 index INFO CPU: 41% (32 cores) * Memory: 12827/245998MB * Storage: 470GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 23:06:20 index STDERR + ls -1sh /tmp/dxvg | |
| 2015-11-09 23:06:20 index STDOUT total 110G | |
| 2015-11-09 23:06:20 index STDOUT 4.9G 10.graph | |
| 2015-11-09 23:06:20 index STDERR + build_gcsa -d 1 -o index /tmp/dxvg/10 /tmp/dxvg/11 /tmp/dxvg/12 /tmp/dxvg/13 /tmp/dxvg/14 /tmp/dxvg/15 /tmp/dxvg/16 /tmp/dxvg/17 /tmp/dxvg/18 /tmp/dxvg/19 /tmp/dxvg/1 /tmp/dxvg/20 /tmp/dxvg/21 /tmp/dxvg/22 /tmp/dxvg/2 /tmp/dxvg/3 /tmp/dxvg/4 /tmp/dxvg/5 /tmp/dxvg/6 /tmp/dxvg/7 /tmp/dxvg/8 /tmp/dxvg/9 /tmp/dxvg/X /tmp/dxvg/Y | |
| 2015-11-09 23:06:20 index STDOUT 135M 10.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 4.9G 11.graph | |
| 2015-11-09 23:06:20 index STDOUT 136M 11.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 4.8G 12.graph | |
| 2015-11-09 23:06:20 index STDOUT 133M 12.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 3.9G 13.graph | |
| 2015-11-09 23:06:20 index STDOUT 100M 13.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 3.6G 14.graph | |
| 2015-11-09 23:06:20 index STDOUT 92M 14.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 3.4G 15.graph | |
| 2015-11-09 23:06:20 index STDOUT 85M 15.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 3.3G 16.graph | |
| 2015-11-09 23:06:20 index STDOUT 86M 16.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 2.9G 17.graph | |
| 2015-11-09 23:06:20 index STDOUT 79M 17.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 2.8G 18.graph | |
| 2015-11-09 23:06:20 index STDOUT 78M 18.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 2.2G 19.graph | |
| 2015-11-09 23:06:20 index STDOUT 59M 19.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 8.5G 1.graph | |
| 2015-11-09 23:06:20 index STDOUT 227M 1.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 2.3G 20.graph | |
| 2015-11-09 23:06:20 index STDOUT 62M 20.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 1.6G 21.graph | |
| 2015-11-09 23:06:20 index STDOUT 38M 21.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 1.7G 22.graph | |
| 2015-11-09 23:06:20 index STDOUT 39M 22.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 8.7G 2.graph | |
| 2015-11-09 23:06:20 index STDOUT 243M 2.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 7.1G 3.graph | |
| 2015-11-09 23:06:20 index STDOUT 200M 3.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 6.9G 4.graph | |
| 2015-11-09 23:06:20 index STDOUT 194M 4.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 6.5G 5.graph | |
| 2015-11-09 23:06:20 index STDOUT 181M 5.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 6.1G 6.graph | |
| 2015-11-09 23:06:20 index STDOUT 171M 6.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 5.7G 7.graph | |
| 2015-11-09 23:06:20 index STDOUT 159M 7.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 5.4G 8.graph | |
| 2015-11-09 23:06:20 index STDOUT 151M 8.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 4.8G 9.graph | |
| 2015-11-09 23:06:20 index STDOUT 124M 9.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 5.0G X.graph | |
| 2015-11-09 23:06:20 index STDOUT 138M X.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT 1.4G Y.graph | |
| 2015-11-09 23:06:20 index STDOUT 16M Y.mod.vg | |
| 2015-11-09 23:06:20 index STDOUT GCSA builder | |
| 2015-11-09 23:06:20 index STDOUT | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/10.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/11.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/12.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/13.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/14.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/15.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/16.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/17.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/18.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/19.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/1.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/20.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/21.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/22.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/2.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/3.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/4.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/5.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/6.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/7.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/8.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/9.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/X.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Input: /tmp/dxvg/Y.graph (binary format) | |
| 2015-11-09 23:06:20 index STDOUT Output: index.gcsa | |
| 2015-11-09 23:06:20 index STDOUT Doubling steps: 1 | |
| 2015-11-09 23:06:20 index STDOUT Size limit: 200 GB | |
| 2015-11-09 23:06:20 index STDOUT | |
| 2015-11-09 23:13:50 index INFO CPU: 24% (32 cores) * Memory: 114620/245998MB * Storage: 469GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 23:23:50 index INFO CPU: 4% (32 cores) * Memory: 131595/245998MB * Storage: 469GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 23:33:50 index INFO CPU: 2% (32 cores) * Memory: 120595/245998MB * Storage: 371GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 23:43:50 index INFO CPU: 2% (32 cores) * Memory: 93196/245998MB * Storage: 326GB free * Net: 0↓/0↑MBps | |
| 2015-11-09 23:53:50 index INFO CPU: 1% (32 cores) * Memory: 156742/245998MB * Storage: 326GB free * Net: 0↓/0↑MBps | |
| 2015-11-10 00:03:50 index INFO CPU: 13% (32 cores) * Memory: 156302/245998MB * Storage: 468GB free * Net: 0↓/0↑MBps | |
| 2015-11-10 00:13:50 index INFO CPU: 3% (32 cores) * Memory: 185319/245998MB * Storage: 468GB free * Net: 0↓/0↑MBps | |
| 2015-11-10 00:23:50 index INFO CPU: 10% (32 cores) * Memory: 162706/245998MB * Storage: 343GB free * Net: 0↓/0↑MBps | |
| 2015-11-10 00:30:43 index STDERR joinPaths(): Size limit exceeded, construction aborted | |
| * index (vg_index:main) (failed) job-Bk01J1Q0QpJ6F3BZv5ZyjBBq | |
| mlin 2015-11-08 19:44:06 (runtime 12:57:05) | |
| AppInternalError: Please consult the job log; the job's reported error could not be parsed from | |
| the file job_error.json |
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