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The swap-window command is closest to what you want.
"Prefix :" (that is "Ctrl-B :" by default) brings you to the tmux-command prompt. There you enter:
swap-window -s 3 -t 1
to let window number 3 and window number 1 swap their positions.
To swap the current window with the top window, do:
swap-window -t 0
In the unlikely case of having no window at index 0, do:
move-window -t 0
(if base-index is 0, as it is by default).
You can bind that command to a key (T for "top" for example) by adding the following to your ~/.tmux.conf:
bind-key T swap-window -t 0
Adding to Gareth's answer, you can use the following key bindings
bind-key -n C-S-Left swap-window -t -1
bind-key -n C-S-Right swap-window -t +1
Pressing Ctrl+Shift+Left (will move the current window to the left. Similarly right. No need to use the modifier (C-b).
You can implement an equivalent to screen's number command using an external shell script that chooses between swap-window and move-window. You can bind it to a key that way:
bind < command-prompt -p index "run-shell '~/.tmux.number.sh %%'"
~/.tmux.number.sh:
#!/bin/bash
if [ $# -ne 1 -o -z "$1" ]; then
exit 1
fi
if tmux list-windows | grep -q "^$1:"; then
tmux swap-window -t $1
else
tmux move-window -t $1
fi
The approach I use combines a bit of Ashish's answer with piec's; I have alt-left and right arrow bound to a quick little shell callout that moves the window one to the left or the right, unless it is the first or last window, respectfully. I did this because, when you issue a swap +1 at the last window (or swap -1 at the first window), it will still swap, instead of looping back around again like you might expect:
0:one 1:two 2:three 3:zero*
Becomes
0:zero* 1:two 2:three 3:one
Instead of
0:zero* 1:one 2:two 3:three
So, the commands I use stop working when the window has reached the edge of the list:
bind-key -n M-Left run-shell 'tmux list-windows | head -n 1 | grep -q active || tmux swap-window -t -1'
bind-key -n M-Right run-shell 'tmux list-windows | tail -n 1 | grep -q active || tmux swap-window -t +1'
This can easily be combined with base-index and renumber-windows to have a list of windows that start at an arbitrary number and never has any gaps.
If you are using base-index 1 like me and you don't think you'll ever go above 999 windows, you can use a little trick to make it roll properly, though the commands bloat a bit:
set -g base-index 1
set -g renumber-windows on
bind-key -n M-Left run-shell 'if tmux list-windows | head -n 1 | grep -q active ; then tmux move-window -t 999 \; move-window -r \; refresh-client -S ; else tmux swap-window -t -1 ; fi'
bind-key -n M-Right run-shell 'if tmux list-windows | tail -n 1 | grep -q active ; then tmux move-window -t 0 \; move-window -r \; refresh-client -S ; else tmux swap-window -t +1 ; fi'
This works by temporarily moving the last window to the unused index-0 and then calling move-window -r to renumber them starting from 1 again. It works similarly when moving the first window to the end; by picking a huge number you'll never use, it ensures that when move-window -r fires again everything will be numbered like you'd expect. If you're wondering about refresh-client -S, that's necessary because sometimes, while the reordering from move-window will work properly, the status bar won't update until further changes are made. By forcing a refresh of just the status bar (-S), you avoid this.
The only issue I can find with this approach is that swap-window will implicitly alter the last-used window to the one you swapped with. Thus, if you are on window #1, switch to window four and move it back one, you'll find that your last-used window is the new # 4 (formerly #3) instead of #1. There doesn't seem to be a way around this.
http://tmuxp.readthedocs.org/en/latest/about_tmux.html

tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname

attach:

tmux a  #  (or at, or attach)

attach to named:

tmux a -t myname

list sessions:

tmux ls

kill session:

tmux kill-session -t myname

Kill all the tmux sessions:

tmux ls | grep : | cut -d. -f1 | awk '{print substr( 0, length()-1)}' | xargs kill

In tmux, hit the prefix ctrl+b (my modified prefix is ctrl+a) and then:

Sessions

:new<CR>  new session
s  list sessions
$  name session

Windows (tabs)

c  new window
w  list windows
f  find window
,  name window
&  kill window

Panes (splits)

%  vertical split
"  horizontal split

o  swap panes
q  show pane numbers
x  kill pane
+  break pane into window (e.g. to select text by mouse to copy)
-  restore pane from window
⍽  space - toggle between layouts
<prefix> q (Show pane numbers, when the numbers show up type the key to goto that pane)
<prefix> { (Move the current pane left)
<prefix> } (Move the current pane right)
<prefix> z toggle pane zoom

Sync Panes

You can do this by switching to the appropriate window, typing your Tmux prefix (commonly Ctrl-B or Ctrl-A) and then a colon to bring up a Tmux command line, and typing:

:setw synchronize-panes

You can optionally add on or off to specify which state you want; otherwise the option is simply toggled. This option is specific to one window, so it won’t change the way your other sessions or windows operate. When you’re done, toggle it off again by repeating the command. tip source

Resizing Panes

You can also resize panes if you don’t like the layout defaults. I personally rarely need to do this, though it’s handy to know how. Here is the basic syntax to resize panes:

PREFIX : resize-pane (By default it resizes the current pane down)
PREFIX : resize-pane -U (Resizes the current pane upward)
PREFIX : resize-pane -L (Resizes the current pane left)
PREFIX : resize-pane -R (Resizes the current pane right)
PREFIX : resize-pane 20 (Resizes the current pane down by 20 cells)
PREFIX : resize-pane -U 20 (Resizes the current pane upward by 20 cells)
PREFIX : resize-pane -L 20 (Resizes the current pane left by 20 cells)
PREFIX : resize-pane -R 20 (Resizes the current pane right by 20 cells)
PREFIX : resize-pane -t 2 20 (Resizes the pane with the id of 2 down by 20 cells)
PREFIX : resize-pane -t -L 20 (Resizes the pane with the id of 2 left by 20 cells)

Copy mode:

Pressing PREFIX [ places us in Copy mode. We can then use our movement keys to move our cursor around the screen. By default, the arrow keys work. we set our configuration file to use Vim keys for moving between windows and resizing panes so we wouldn’t have to take our hands off the home row. tmux has a vi mode for working with the buffer as well. To enable it, add this line to .tmux.conf:

setw -g mode-keys vi

With this option set, we can use h, j, k, and l to move around our buffer.

To get out of Copy mode, we just press the ENTER key. Moving around one character at a time isn’t very efficient. Since we enabled vi mode, we can also use some other visible shortcuts to move around the buffer.

For example, we can use "w" to jump to the next word and "b" to jump back one word. And we can use "f", followed by any character, to jump to that character on the same line, and "F" to jump backwards on the line.

   Function                vi             emacs
   Back to indentation     ^              M-m
   Clear selection         Escape         C-g
   Copy selection          Enter          M-w
   Cursor down             j              Down
   Cursor left             h              Left
   Cursor right            l              Right
   Cursor to bottom line   L
   Cursor to middle line   M              M-r
   Cursor to top line      H              M-R
   Cursor up               k              Up
   Delete entire line      d              C-u
   Delete to end of line   D              C-k
   End of line             $              C-e
   Goto line               :              g
   Half page down          C-d            M-Down
   Half page up            C-u            M-Up
   Next page               C-f            Page down
   Next word               w              M-f
   Paste buffer            p              C-y
   Previous page           C-b            Page up
   Previous word           b              M-b
   Quit mode               q              Escape
   Scroll down             C-Down or J    C-Down
   Scroll up               C-Up or K      C-Up
   Search again            n              n
   Search backward         ?              C-r
   Search forward          /              C-s
   Start of line           0              C-a
   Start selection         Space          C-Space
   Transpose chars                        C-t

Misc

d  detach
t  big clock
?  list shortcuts
:  prompt

Configurations Options:

# Mouse support - set to on if you want to use the mouse
* setw -g mode-mouse off
* set -g mouse-select-pane off
* set -g mouse-resize-pane off
* set -g mouse-select-window off

# Set the default terminal mode to 256color mode
set -g default-terminal "screen-256color"

# enable activity alerts
setw -g monitor-activity on
set -g visual-activity on

# Center the window list
set -g status-justify centre

# Maximize and restore a pane
unbind Up bind Up new-window -d -n tmp \; swap-pane -s tmp.1 \; select-window -t tmp
unbind Down
bind Down last-window \; swap-pane -s tmp.1 \; kill-window -t tmp

Resources:

Notes:

Changelog:

Request an Update:

We Noticed that our Cheatsheet is growing and people are coloberating to add new tips and tricks, so please tweet to me what would you like to add and let's make it better!

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