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SAS dataset to sqlite wrapper of the sas7bdat python package
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#!/usr/bin/python | |
# Filename: sas_export.py | |
# -*- coding: utf-8 -*- | |
""" | |
Created on Tue Jan 06 18:40:09 2015 | |
@author: David Carlson | |
modified version for sas7bdat 2.0.1 of Charlie Huang version at: | |
http://www.sasanalysis.com/2014/08/python-extension-functions-to-translate.html | |
""" | |
import sqlite3 | |
import glob | |
import sas7bdat | |
import logging | |
import os | |
import itertools | |
import time | |
def split_seq(iterable, size): | |
it = iter(iterable) | |
item = list(itertools.islice(it, size)) | |
while item: | |
yield item | |
item = list(itertools.islice(it, size)) | |
class SASexport(sas7bdat.SAS7BDAT): | |
def head(self, n=5): | |
for i, row in enumerate(self): | |
if i != 0: | |
print row | |
if i > n: | |
break | |
def to_sqlite(self, | |
sqlitedb=None, | |
step_size=100000, | |
batch_size=10000, | |
scrub_function = None): | |
if sqlitedb is None: | |
file_name = self.properties.filename.split('.')[0] | |
sqlitedb = os.path.join(os.path.dirname(self.path), | |
file_name + '.db3') | |
if not isinstance(sqlitedb, str): | |
print('not a valid database path: ' + sqlitedb) | |
self.logger.debug('saving as: %s', sqlitedb) | |
cols = self.columns | |
strs = [''] * len(cols) | |
for i, n in enumerate(cols): | |
if n.type == "number": | |
strs[i] = n.name + ' real' | |
else: | |
strs[i] = n.name + ' varchar({})'.format(n.length) | |
table = self.properties.name | |
cmd1 = "CREATE TABLE {} ({})".format(table, ', '.join(strs)) | |
cmd2 = 'INSERT OR IGNORE INTO {} VALUES ( {} )'.format( | |
table, | |
','.join(['?']*len(cols))) | |
conn = sqlite3.connect(sqlitedb) | |
conn.isolation_level = None | |
c = conn.cursor() | |
success=True | |
t = time.time() | |
i = 0 | |
try: | |
for chunk in split_seq(self, batch_size): | |
if i == 0: | |
c.execute('DROP TABLE IF EXISTS {}'.format(table)) | |
c.execute(cmd1) | |
c.execute('begin') | |
for line in chunk: | |
if len(line) != (self.properties.column_count or 0): | |
msg = 'parsed line into %s columns but was ' \ | |
'expecting %s.\n%s' %\ | |
(len(line), self.properties.column_count, line) | |
self.logger.error(msg) | |
success = False | |
if self.logger.level == logging.DEBUG: | |
raise sas7bdat.ParseError(msg) | |
break | |
if not i % step_size: | |
self.logger.info( | |
'%.1f%% complete', | |
float(i) / self.properties.row_count * 100.0 | |
) | |
try: | |
if i != 0: | |
if scrub_function != None: | |
scrub_function(line) | |
c.execute(cmd2, line) | |
except IOError: | |
self.logger.warn('wrote %s lines before interruption', i) | |
break | |
i += 1 | |
c.execute('commit') | |
self.logger.info(u'\u27f6 [%s] wrote %s of %s lines', | |
os.path.basename(sqlitedb), i-1, | |
self.properties.row_count or 0) | |
self.logger.info('\n time taken: %.3f sec', (time.time()-t)) | |
finally: | |
conn.commit() | |
c.close() | |
return success | |
class SASbatchexport: | |
def __init__(self, directory): | |
if directory is None or not isinstance(directory, str): | |
raise ValueError('SAS library path has to be specified') | |
self.directory = directory | |
def to_sqlitedb(self, dest=None): | |
"""Export all SAS data sets to a SQLite database""" | |
if dest is None or not isinstance(dest, str): | |
print 'The output SQLite db will be name as SASOUTPUT.db' | |
dest = 'SASOUTPUT.db' | |
s = self.directory + '/*.sas7bdat' | |
for sasfile in glob.glob(s): | |
_data = SASexport(sasfile) | |
_data.to_sqlite(dest) | |
print 'SAS dataset {} has been successfully exported'.format( \ | |
_data.header.dataset) |
is there some way i can convert sqlite database to sas?
@yashraikar1087 Looks like ODBC might be the way to go. https://communities.sas.com/t5/Administration-and-Deployment/Is-there-a-way-to-read-a-SQLite-database-using-SAS/td-p/173271
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never mind. I am able to retrieve the data from the following code -
import sqlite3
conn = sqlite3.connect('mydata.db3')
c = conn.cursor()
c.execute("select * from mydata")
queryResult = zip(*c.fetchall())
for r in range(len(queryResult[0])):
print queryResult[0][r]