Created
August 6, 2023 16:25
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Install tiledbsoma-r on a fresh R/Debian install with no binary packages
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FROM rocker/r-base:latest | |
RUN apt-get update && \ | |
apt-get install -y ca-certificates lsb-release curl cmake git | |
RUN curl -O https://apache.jfrog.io/artifactory/arrow/$(lsb_release --id --short | tr 'A-Z' 'a-z')/apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb | |
RUN apt-get install -yV ./apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb | |
RUN apt-get update && apt-get install -y libarrow-dev | |
RUN Rscript -e "\ | |
ncores <- as.integer(system2('grep', c('-c', 'processor', '/proc/cpuinfo'), stdout = TRUE)); \ | |
ncpus <- max(1L, floor(ncores * 0.75)); \ | |
install.packages('tiledbsoma', repos = c('https://tiledb-inc.r-universe.dev', 'https://cloud.r-project.org'), Ncpus = ncpus); \ | |
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