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May 7, 2018 17:08
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Pandas (v0.22) fails to roundtrip category types.
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import pandas as pd | |
# Create a DataFrame df_orig and write to Parquet | |
size = 1000 | |
df_orig = pd.DataFrame( | |
data={ | |
'a': size*['foo', 'bar', 'baz'], | |
'b': size*['foo', 'bar', 'baz'], | |
'c': size*['foo', 'bar', 'baz'], | |
}) | |
print(df_orig.head(10),'\n') | |
df_orig.to_parquet(fname='df_orig.prq', engine='fastparquet') | |
# Coerce df_orig to a categorical variables: df_cat | |
df_cat0 = df_orig.copy() | |
for col in df_cat0.columns: | |
df_cat0[col] = df_cat0[col].astype('category') | |
# Roundtripping through Parquet | |
df_cat0.to_parquet(fname='df_cat0.prq', engine='fastparquet') | |
df_cat1 = pd.read_parquet(path='df_cat0.prq') | |
# Examine read Parquet DataFrame | |
print('df_orig - original all dtype object') | |
df_orig.info(memory_usage='deep') | |
print() | |
print('df_cat0 - all dtype categories') | |
df_cat0.info(memory_usage='deep') | |
print() | |
print('df_cat1 - df_cat0 read from disk - all dtype object') | |
df_cat1.info(memory_usage='deep') | |
print() |
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# python3 bug_categories.py | |
a b c | |
0 foo foo foo | |
1 bar bar bar | |
2 baz baz baz | |
3 foo foo foo | |
4 bar bar bar | |
5 baz baz baz | |
6 foo foo foo | |
7 bar bar bar | |
8 baz baz baz | |
9 foo foo foo | |
df_orig - original all dtype object | |
<class 'pandas.core.frame.DataFrame'> | |
RangeIndex: 3000 entries, 0 to 2999 | |
Data columns (total 3 columns): | |
a 3000 non-null object | |
b 3000 non-null object | |
c 3000 non-null object | |
dtypes: object(3) | |
memory usage: 527.4 KB | |
df_cat0 - all dtype categories | |
<class 'pandas.core.frame.DataFrame'> | |
RangeIndex: 3000 entries, 0 to 2999 | |
Data columns (total 3 columns): | |
a 3000 non-null category | |
b 3000 non-null category | |
c 3000 non-null category | |
dtypes: category(3) | |
memory usage: 9.6 KB | |
df_cat1 - df_cat0 read from disk - all dtype object | |
<class 'pandas.core.frame.DataFrame'> | |
RangeIndex: 3000 entries, 0 to 2999 | |
Data columns (total 3 columns): | |
a 3000 non-null object | |
b 3000 non-null object | |
c 3000 non-null object | |
dtypes: object(3) | |
memory usage: 527.4 KB |
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-rw-r--r-- 1 mookerji staff 1.8K May 7 09:56 df_cat0.prq | |
-rw-r--r-- 1 mookerji staff 3.8K May 7 09:56 df_orig.prq |
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>>> import pandas as pd | |
>>> pd.show_versions() | |
INSTALLED VERSIONS | |
------------------ | |
commit: None | |
python: 3.6.5.final.0 | |
python-bits: 64 | |
OS: Darwin | |
OS-release: 17.5.0 | |
machine: x86_64 | |
processor: i386 | |
byteorder: little | |
LC_ALL: None | |
LANG: en_US.UTF-8 | |
LOCALE: en_US.UTF-8 | |
pandas: 0.22.0 | |
pytest: 3.5.0 | |
pip: 9.0.3 | |
setuptools: 39.0.1 | |
Cython: None | |
numpy: 1.14.2 | |
scipy: 1.1.0rc1 | |
pyarrow: 0.7.1 | |
xarray: None | |
IPython: 6.3.1 | |
sphinx: None | |
patsy: None | |
dateutil: 2.6.1 | |
pytz: 2018.4 | |
blosc: None | |
bottleneck: None | |
tables: 3.4.2 | |
numexpr: 2.6.4 | |
feather: None | |
matplotlib: 2.1.2 | |
openpyxl: None | |
xlrd: None | |
xlwt: None | |
xlsxwriter: None | |
lxml: None | |
bs4: None | |
html5lib: 1.0.1 | |
sqlalchemy: 1.2.7 | |
pymysql: None | |
psycopg2: 2.7.4 (dt dec pq3 ext lo64) | |
jinja2: 2.8.1 | |
s3fs: 0.1.0 | |
fastparquet: 0.1.5 | |
pandas_gbq: None | |
pandas_datareader: None |
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