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moonwatcher/gist:0a830672a4def95970b7

Created November 8, 2015 18:41
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gistfile1.txt
Comment leading VH J558.1.85*01 is non functional P
R name strain S F I G P c57bl6b01t01spfb1a | @M00595:21:000000000-A4G6U:1:1101:14408:3540 1:N:0:ATAGG | VH : J558.1.85 | DH : DFL16.1 | JH : IGHJ4 | CDR3 : -6.2 2156 | in frame | Q 36.47
0 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143
AA TCC TCC AGC ACA GCC TAC ATG CAA CTC AGC AGC CTG ACA TCT GAG GAC TCT GCG GTC TAT TAC TGT GCA TAT TAC TAC GGT AGT AGC TAC TAT GCT ATG GAC TAC TGG GGT CAA GGA ACC TCA GTC ACC GTC TCC TCA GGT AAG
GG BGG AHH HGF HGG HD? HHH GHH EGF B4H HGH HHH FGF FFH GHH HGF GHH CCG GEB FHG FHH FGH GHH FHH GGD ABA EFE GDD FFF FHH GHH HHB FGB HHH GDH HFE 2EG 3GB HHG FGH HFC C5D GAF EEE AGA G2F AFF FCF FFF
S S S T A Y M Q L S S L T S E D S A V Y Y C A Y Y Y G S S Y Y A M D Y W G Q G T S V T V S S G K
VH J558.1.85 C57BL/6 + P * * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
VH J558.67.166 C57BL/6 + F * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
VH J558.52.145 C57BL/6 + F * -- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
DH DFL16.1 C57BL/6 + F * -- --- --- --- --- ---
DH DSP2.9 C57BL/6 + F - --- ---
DH DHPR7 C57BL/6 + O ---
DH DHPR8 C57BL/6 + O ---
DH DHPS1 C57BL/6 + P ---
JH IGHJ4 C57BL/6 + F * * --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
JH IGHJ2 C57BL/6 + F * --- --- --- --C --- --C --- A-T C-- --A --- --- --- -
- - - - - - - T L - - - -
JH IGHJ3 C57BL/6 + F * --- --- --C --- --
CDR3 + * --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Comment leading VH J558.1.85*01 is non functional P
R name strain S F I G P c57bl6b01t01spfb1a | @M00595:21:000000000-A4G6U:1:1101:17780:3561 1:N:0:ATAGG | VH : J558.1.85 | DH : DFL16.1 | JH : IGHJ4 | CDR3 : -6.2 2156 | in frame | Q 37.63
0 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143
AA TCC TCC AGC ACA GCC TAC ATG CAA CTC AGC AGC CTG ACA TCT GAG GAC TCT GCG GTC TAT TAC TGT GCA TAT TAC TAC GGT AGT AGC TAC TAT GCT ATG GAC TAC TGG GGT CAA GGA ACC TCA GTC ACC GTC TCC TCA GGT AAG
GG /GH HHF FGG FF3 FGE HGG GFD GGB GHH HGH HHG HHH GGH HGH HFH HGH EGG GGH HHH HHH HDH HHH HHF HHH FAG HGE CFH GHH HHH GHH HHH HHH HHH HHH HHG GGH HHH HHH HHH HGH GHH HGG AGF FAE GFB 4GF FFF FFF
S S S T A Y M Q L S S L T S E D S A V Y Y C A Y Y Y G S S Y Y A M D Y W G Q G T S V T V S S G K
VH J558.1.85 C57BL/6 + P * * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
VH J558.67.166 C57BL/6 + F * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
VH J558.52.145 C57BL/6 + F * -- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
DH DFL16.1 C57BL/6 + F * -- --- --- --- --- ---
DH DSP2.9 C57BL/6 + F - --- ---
DH DHPR7 C57BL/6 + O ---
DH DHPR8 C57BL/6 + O ---
DH DHPS1 C57BL/6 + P ---
JH IGHJ4 C57BL/6 + F * * --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
JH IGHJ2 C57BL/6 + F * --- --- --- --C --- --C --- A-T C-- --A --- --- --- -
- - - - - - - T L - - - -
JH IGHJ3 C57BL/6 + F * --- --- --C --- --
CDR3 + * --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Comment leading VH J558.1.85*01 is non functional P
R name strain S F I G P c57bl6b01t01spfb1a | @M00595:21:000000000-A4G6U:1:1101:18874:3584 1:N:0:ATAGG | VH : J558.1.85 | DH : DFL16.1 | JH : IGHJ4 | CDR3 : -6.2 2156 | in frame | Q 33.21
0 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143
AA GCC TCC AGC ACA GCC TAC ATG CAA CTC AGC AGC CTG ACA TCT GAG GAC TCT GCT GTC TAT TAC TGT GCA TAT TAC TAC GGT AGT AGC TAC TAT GCT ATG GAC TAC TGG GGT CAA GGA ACC TCA GTC ACC GTC TCC TCA GGT AAG
F? /EF BB1 BBC <B1 11F GDG BHG BFH HHH HFE 00G F2G F1F F1G F2F @F? >GF G>1 HGF DDB 2F0 FFF BHH FGE A/G HFE F1D 1CB 21E FFH FFB HHE GHG FGH GEE AGH GHH HHH HGH EEF GB3 HFG AAA FCE GCF GFF B11 CCF
A S S T A Y M Q L S S L T S E D S A V Y Y C A Y Y Y G S S Y Y A M D Y W G Q G T S V T V S S G K
VH J558.1.85 C57BL/6 + P * * -- T-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G --- --- --- --- --- -
S - - - - - - - - - - - - - - - - - - - - - -
VH J558.67.166 C57BL/6 + F * -- T-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G --- --- --- --- ---
S - - - - - - - - - - - - - - - - - - - - - -
VH J558.2.88 C57BL/6 + F * -- T-- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --A --- --- --- --- ---
S - - - - - - - - - - - - - - - - - - - - - -
DH DFL16.1 C57BL/6 + F * -- --- --- --- --- ---
DH DSP2.9 C57BL/6 + F - --- ---
DH DHPR7 C57BL/6 + O ---
DH DHPR8 C57BL/6 + O ---
DH DHPS1 C57BL/6 + P ---
JH IGHJ4 C57BL/6 + F * * --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
JH IGHJ2 C57BL/6 + F * --- --- --- --C --- --C --- A-T C-- --A --- --- --- -
- - - - - - - T L - - - -
JH IGHJ3 C57BL/6 + F * --- --- --C --- --
CDR3 + * --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Comment leading VH J558.1.85*01 is non functional P
R name strain S F I G P c57bl6b01t01spfb1a | @M00595:21:000000000-A4G6U:1:1101:14295:3624 1:N:0:ATAGG | VH : J558.1.85 | DH : DFL16.1 | JH : IGHJ4 | CDR3 : -6.2 2156 | in frame | Q 36.88
0 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143
AA TCC TCC AGC ACA GCC TAC ATG CAA CTC AGC AGC CTG ACA TCT GAG GAC TCT GCG GTC TAT TAC TGT GCA TAT TAC TAC GGT AGT AGC TAC TAT GCT ATG GAC TAC TGG GGT CAA GGA ACC TCA GTC ACC GTC TCC TCA GGT AAG
GC AGG CHG GFG GHG HHF BGF FEF HHG CDF HGG HFG GGF FGF 1BE FGE F@/ @?G GGH GHE DGG GEF GHH FHG EFH FFE HEG HHH GBH HFF HFF HHH GHH HFH HHH GFE GEG CHH HHH HFH FEH HHH GAH GGG FGE G1F BGF FFF FBF
S S S T A Y M Q L S S L T S E D S A V Y Y C A Y Y Y G S S Y Y A M D Y W G Q G T S V T V S S G K
VH J558.1.85 C57BL/6 + P * * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
VH J558.67.166 C57BL/6 + F * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
VH J558.52.145 C57BL/6 + F * -- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
DH DFL16.1 C57BL/6 + F * -- --- --- --- --- ---
DH DSP2.9 C57BL/6 + F - --- ---
DH DHPR7 C57BL/6 + O ---
DH DHPR8 C57BL/6 + O ---
DH DHPS1 C57BL/6 + P ---
JH IGHJ4 C57BL/6 + F * * --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
JH IGHJ2 C57BL/6 + F * --- --- --- --C --- --C --- A-T C-- --A --- --- --- -
- - - - - - - T L - - - -
JH IGHJ3 C57BL/6 + F * --- --- --C --- --
CDR3 + * --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Comment leading VH J558.1.85*01 is non functional P
R name strain S F I G P c57bl6b01t01spfb1a | @M00595:21:000000000-A4G6U:1:1101:15316:3676 1:N:0:ATAGG | VH : J558.1.85 | DH : DFL16.1 | JH : IGHJ4 | CDR3 : -6.2 2156 | in frame | Q 36.48
0 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143
AA TCC TCC AGC ACA GCC TAC ATG CAA CTC AGC AGC CTG ACA TCT GAG GAC TCT GCG GTC TAT TAC TGT GCA TAT TAC TAC GGT AGT AGC TAC TAT GCT ATG GAC TAC TGG GGT CAA GGA ACC TCA GTC ACC GTC TCC TCA GGT AAG
HF ??G HGH HHH HHH FHG GHF HHG FB4 0FF GGH HE0 ??E EDH HHF FFH FHF @@G ECG HHH HGD DBF HGG FHH HGG EBG HGE G5A 3GF FHE HHH FGH HFH HHG HFG EFG GGH GHF HGH HGG F2H HHH FGH EEE FGE BGG GAD FFF FFF
S S S T A Y M Q L S S L T S E D S A V Y Y C A Y Y Y G S S Y Y A M D Y W G Q G T S V T V S S G K
VH J558.1.85 C57BL/6 + P * * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
VH J558.67.166 C57BL/6 + F * -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
VH J558.52.145 C57BL/6 + F * -- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
DH DFL16.1 C57BL/6 + F * -- --- --- --- --- ---
DH DSP2.9 C57BL/6 + F - --- ---
DH DHPR7 C57BL/6 + O ---
DH DHPR8 C57BL/6 + O ---
DH DHPS1 C57BL/6 + P ---
JH IGHJ4 C57BL/6 + F * * --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
JH IGHJ2 C57BL/6 + F * --- --- --- --C --- --C --- A-T C-- --A --- --- --- -
- - - - - - - T L - - - -
JH IGHJ3 C57BL/6 + F * --- --- --C --- --
CDR3 + * --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Comment leading VH J558.1.85*01 is non functional P
R name strain S F I G P c57bl6b01t01spfb1a | @M00595:21:000000000-A4G6U:1:1101:12520:3742 1:N:0:ATAGG | VH : J558.1.85 | DH : DFL16.1 | JH : IGHJ4 | CDR3 : -6.2 2156 | in frame | Q 31.63
0 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143
AA TCC TCC AGC ACA GCC TAC ATG CAT CTC AGC AGC CTG ACA TCT GAG GAC TCT GCG GTC TAT TAC TGT GCA TAT TAC TAC GGT AGT AGC TAC TAT GCT ATG GAC TAC TGG GGT CAA GGA ACC TCA GTC ACC GTC TCC TCA GGT AAG
D0 FC< 01B 2F< CE1 BFH HED DF1 B>1 011 GEB GF0 HHD HGB @C@ @2B 11/ ?GE EEF HFG FGG F1B GHG FF2 D22 GFE F/E GHF GFG EFF HFG GHG B1F 2DA 22G FFE EEH FFH FHG GHG FCF 11B G0E A0E 1F? FFB 1GF CC@ 11F
S S S T A Y M H L S S L T S E D S A V Y Y C A Y Y Y G S S Y Y A M D Y W G Q G T S V T V S S G K
VH J558.1.85 C57BL/6 + P * * -- --- --- --- --- --- --- --- --A --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
- - - - - - - Q - - - - - - - - - - - - - - -
VH J558.52.145 C57BL/6 + F * -- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
- - - - - - - Q - - - - - - - - - - - - - - -
VH J558.61.157 C57BL/6 + F * -- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
- - - - - - - Q - - - - - - - - - - - - - - -
DH DFL16.1 C57BL/6 + F * -- --- --- --- --- ---
DH DSP2.9 C57BL/6 + F - --- ---
DH DHPR7 C57BL/6 + O ---
DH DHPR8 C57BL/6 + O ---
DH DHPS1 C57BL/6 + P ---
JH IGHJ4 C57BL/6 + F * * --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
JH IGHJ2 C57BL/6 + F * --- --- --- --C --- --C --- A-T C-- --A --- --- --- -
- - - - - - - T L - - - -
JH IGHJ3 C57BL/6 + F * --- --- --C --- --
CDR3 + * --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
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