Demux config for C48L7ACXX

C48L7ACXX.json

{
    "name": "C48L7ACXX_V2",
    "email": "[email protected]",
    "flowcell path": "/scratch/gencore/hiseq-700911/140711_SN911_0222_BC48L7ACXX",
    "output path": "/data/cgsb/gencore/manual",
    "configure bcl2fastq": "--use-bases-mask \"Y*,I6nnn,n*,Y*\" --tiles \"s_2,s_3,s_4,s_6,s_7,s_8\"",
    "sample sheet": [
        "C48L7ACXX,2,1L22A,,ATCACG,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,3L22A,,CGATGT,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,13L22A,,TTAGGC,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,20L22A,,TGACCA,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,1L15A,,ACAGTG,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,3L15A,,GCCAAT,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,13L15A,,CAGATC,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,20L15A,,ACTTGA,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,1S15A,,GATCAG,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,3A15A,,TAGCTT,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,13S15A,,GGCTAC,,N,,karen_hicks,lane2",
        "C48L7ACXX,2,20S15A,,CTTGTA,,N,,karen_hicks,lane2",
        "C48L7ACXX,3,1L22B,,ATCACG,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,3L22B,,CGATGT,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,13L22B,,TTAGGC,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,20L22B,,TGACCA,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,1L15B,,ACAGTG,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,3L15B,,GCCAAT,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,13L15B,,CAGATC,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,20L15B,,ACTTGA,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,1S15B,,GATCAG,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,3A15B,,TAGCTT,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,13S15B,,GGCTAC,,N,,karen_hicks,lane3",
        "C48L7ACXX,3,20S15B,,CTTGTA,,N,,karen_hicks,lane3",
        "C48L7ACXX,4,1L22C,,ATCACG,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,3L22C,,CGATGT,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,13L22C,,TTAGGC,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,20L22C,,TGACCA,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,1L15C,,ACAGTG,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,3L15C,,GCCAAT,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,13L15C,,CAGATC,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,20L15C,,ACTTGA,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,1S15C,,GATCAG,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,3A15C,,TAGCTT,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,13S15C,,GGCTAC,,N,,karen_hicks,lane4",
        "C48L7ACXX,4,20S15C,,CTTGTA,,N,,karen_hicks,lane4",
        "C48L7ACXX,6,A80,,CGATGT,,N,,rodoniki_athanasiadou,lane6",
        "C48L7ACXX,6,A18,,TGACCA,,N,,rodoniki_athanasiadou,lane6",
        "C48L7ACXX,6,B80a,,ACAGTG,,N,,rodoniki_athanasiadou,lane6",
        "C48L7ACXX,6,B80b,,GATCAG,,N,,rodoniki_athanasiadou,lane6",
        "C48L7ACXX,6,B18a,,CTCAGA,,N,,rodoniki_athanasiadou,lane6",
        "C48L7ACXX,6,B18b,,TAGCTT,,N,,rodoniki_athanasiadou,lane6",
        "C48L7ACXX,7,ZL1,,CGATGT,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL2,,TGACCA,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL3,,ACAGTG,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL4,,GCCAAT,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL5,,CAGATC,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL6,,CTTGTA,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL7,,ATCACG,,N,,zunping_luo,lane7",
        "C48L7ACXX,7,ZL8,,TTAGGC,,N,,zunping_luo,lane7",
        "C48L7ACXX,8,ZL1,,CGATGT,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL2,,TGACCA,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL3,,ACAGTG,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL4,,GCCAAT,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL5,,CAGATC,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL6,,CTTGTA,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL7,,ATCACG,,N,,zunping_luo,lane8",
        "C48L7ACXX,8,ZL8,,TTAGGC,,N,,zunping_luo,lane8"
    ]
}