Skip to content

Instantly share code, notes, and snippets.

@moonwatcher

moonwatcher/gist:c07cb06a25fbcd5c0d97

Created September 25, 2014 03:55
Show Gist options

  • Select an option

    Learn more about clone URLs
  • Save moonwatcher/c07cb06a25fbcd5c0d97 to your computer and use it in GitHub Desktop.

Select an option

Learn more about clone URLs
Save moonwatcher/c07cb06a25fbcd5c0d97 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
gistfile1.json
{
"_id": "542391398d741f66ce5146b9",
"body": {
"canonical": {
"illumina flowcell id": "H9558ADXX",
"lanes": [
{
"control lane": false,
"created": "2014-09-20T13:41:40.692503",
"description": "Purugganan : Pool A",
"knowledge uri": "/k/lane/2",
"lane id": 2,
"pools": [
{
"created": "2014-09-20T13:41:38.517322",
"description": "H9558ADXX",
"knowledge uri": "/k/pool/3",
"library pool correlations": [
{
"created": "2014-09-20T13:41:38.525785",
"libraries": [
{
"barcodes": [
{
"barcode id": 5,
"barcode name": "N501",
"barcode position": 0,
"barcode region": "i5",
"barcode sequence": "TAGATCGC",
"barcode set": "Nextera DNA Sample Prep Kit",
"barcode source": "Illumina",
"knowledge uri": "/k/barcode/5",
"web barcode id": 12
},
{
"barcode id": 6,
"barcode name": "N502",
"barcode position": 0,
"barcode region": "i5",
"barcode sequence": "CTCTCTAT",
"barcode set": "Nextera DNA Sample Prep Kit",
"barcode source": "Illumina",
"knowledge uri": "/k/barcode/6",
"web barcode id": 13
}
],
"created": "2014-09-20T13:41:38.523564",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_8022",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/4",
"library experimental application": "DNA-seq",
"library id": 4,
"library name": "Os_8022-1x",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 459,
"web uuid": "e68529fa-a978-4902-9938-28d3f9396d20"
}
],
"library precent": 16.7,
"web library pool correlation id": 541,
"web uuid": "68d093bd-1f7f-4b9a-b431-36baa08c0b9e"
},
{
"created": "2014-09-20T13:41:38.533338",
"libraries": [
{
"created": "2014-09-20T13:41:38.531168",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_23361",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/7",
"library experimental application": "DNA-seq",
"library id": 7,
"library name": "Os_23361-26",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 460,
"web uuid": "c1a994ac-0d22-4234-a62f-ecb8e5d1c7ec"
}
],
"library precent": 16.7,
"web library pool correlation id": 542,
"web uuid": "374b45a9-6db2-4036-9cce-eaafa5457ea7"
},
{
"created": "2014-09-20T13:41:38.540910",
"libraries": [
{
"created": "2014-09-20T13:41:38.538652",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_23362",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/8",
"library experimental application": "DNA-seq",
"library id": 8,
"library name": "Os_23362-27",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 461,
"web uuid": "1438c987-3af0-41e5-baff-947b0345cb1a"
}
],
"library precent": 16.7,
"web library pool correlation id": 543,
"web uuid": "3ac4c4e7-c8f6-4fd1-89cb-a0dbd6b24445"
},
{
"created": "2014-09-20T13:41:38.548660",
"libraries": [
{
"created": "2014-09-20T13:41:38.546247",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_44349",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/9",
"library experimental application": "DNA-seq",
"library id": 9,
"library name": "Os_44349-28x",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 462,
"web uuid": "1836f641-321c-4380-b916-dd5910504bd1"
}
],
"library precent": 16.7,
"web library pool correlation id": 544,
"web uuid": "66d94cc3-b5f9-4be0-9443-709f65416786"
},
{
"created": "2014-09-20T13:41:38.557419",
"libraries": [
{
"created": "2014-09-20T13:41:38.554097",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_60589",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/10",
"library experimental application": "DNA-seq",
"library id": 10,
"library name": "Os_60589-35x",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 463,
"web uuid": "2ac4d49a-5501-4d69-ae24-69ad223bb1c6"
}
],
"library precent": 16.7,
"web library pool correlation id": 545,
"web uuid": "97bad402-a560-4dc0-85f2-79e40e4c4d5e"
},
{
"created": "2014-09-20T13:41:38.565968",
"libraries": [
{
"created": "2014-09-20T13:41:38.563509",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_60590",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/11",
"library experimental application": "DNA-seq",
"library id": 11,
"library name": "Os_60590-36x",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 464,
"web uuid": "d5fcce18-0b7f-462f-86ce-35b817e8b701"
}
],
"library precent": 16.7,
"web library pool correlation id": 546,
"web uuid": "a30b0039-08f5-4379-8be0-003b2aed3ca6"
}
],
"pool id": 3,
"pooled date": "2014-09-20T13:41:38",
"seeding concentration": 11.0,
"submission concentration": 2.0,
"submission date": "2014-09-20T13:41:38",
"total volume": 25.0,
"web pool id": 61,
"web uuid": "bcdeccbe-eb3a-4266-b856-a1831675f48e"
}
],
"web lane id": 33,
"web uuid": "2b6433fb-c28a-474a-8275-c67a74cb0be2"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.697438",
"description": "Purugganan : Pool B",
"knowledge uri": "/k/lane/12",
"lane id": 12,
"pools": [
{
"created": "2014-09-20T13:41:38.573446",
"description": "H9558ADXX",
"knowledge uri": "/k/pool/13",
"library pool correlations": [
{
"created": "2014-09-20T13:41:38.581045",
"libraries": [
{
"created": "2014-09-20T13:41:38.578804",
"description": "KAPA-double-SPRI-selected-Illumina-DNAOs_60574",
"fragment size estimation method": "Bioanalyzer",
"knowledge uri": "/k/library/14",
"library experimental application": "DNA-seq",
"library id": 14,
"library name": "Os_60574-5",
"mean fragment size": 200,
"protocol kit name": "KAPA Library Preparation Kit - Illumina",
"web library id": 465,
"web uuid": "6a4e5dcc-3b8b-4692-8ef8-5cc48fd193c4"
}
],
"library precent": 16.7,
"web library pool correlation id": 547,
"web uuid": "f4aab0de-e489-4faf-8410-e4c0b0917c7a"
}
],
"pool id": 13,
"pooled date": "2014-09-20T13:41:38",
"seeding concentration": 11.0,
"submission concentration": 2.0,
"submission date": "2014-09-20T13:41:38",
"total volume": 25.0,
"web pool id": 62,
"web uuid": "c87bf8e7-4b34-46b1-a1d7-0803030ee0c8"
}
],
"web lane id": 34,
"web uuid": "ea79e1dc-58c8-4a5f-ab57-a0727080eb0d"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.702405",
"description": ":",
"knowledge uri": "/k/lane/15",
"lane id": 15,
"web lane id": 35,
"web uuid": "60e09c91-8276-4e21-b0b5-71a98a78f701"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.704619",
"description": ":",
"knowledge uri": "/k/lane/16",
"lane id": 16,
"web lane id": 36,
"web uuid": "7b912e37-bae0-4f78-95d7-baead1290a58"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.706684",
"description": ":",
"knowledge uri": "/k/lane/17",
"lane id": 17,
"web lane id": 37,
"web uuid": "6d19b622-39f6-41af-8993-51641ccb2f55"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.708742",
"description": ":",
"knowledge uri": "/k/lane/18",
"lane id": 18,
"web lane id": 38,
"web uuid": "943004e4-8012-4564-9d58-8126871139b1"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.710821",
"description": ":",
"knowledge uri": "/k/lane/19",
"lane id": 19,
"web lane id": 39,
"web uuid": "c9e1a460-5695-4546-824e-bf8526fc73a1"
},
{
"control lane": false,
"created": "2014-09-20T13:41:40.712955",
"description": ":",
"knowledge uri": "/k/lane/20",
"lane id": 20,
"web lane id": 40,
"web uuid": "9eabb94d-ba7d-46aa-af95-10aa55b3893c"
}
],
"web flowcell id": 5,
"web uuid": "4bdcdddf-db93-4a47-9fb4-1308c46073b1"
},
"original": null
},
"head": {
"alternate": [
"/k/flowcell/1"
],
"canonical": "/k/flowcell/1",
"created": "2014-09-25T03:51:21.306000",
"genealogy": {
"flowcell id": 1,
"illumina flowcell id": "H9558ADXX",
"media kind": 50,
"web flowcell id": 5
},
"modified": "2014-09-25T03:51:21.306000",
"namespace": "knowledge/flowcell"
}
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment