Lior Galanti moonwatcher
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| { | |
| "name": "C4MVUACXX_dual", | |
| "email": "lg1883@nyu.edu", | |
| "flowcell path": "/export/data1/gencore/140828_SN911_0230_AC4MVUACXX", | |
| "output path": "/export/data1/demux", | |
| "configure bcl2fastq": "--use-bases-mask \"Y*,I8n,I8n,Y*\" --tiles \"s_6\"", | |
| "sample sheet": [ | |
| "C4MVUACXX,6,G140_A6_L1,,TAGATCGC-TAAGGCGA,,N,,,lane6", | |
| "C4MVUACXX,6,G140_A6_L114,,TAGATCGC-CGTACTAG,,N,,,lane6", | |
| "C4MVUACXX,6,G140_A6_L115,,TAGATCGC-AGGCAGAA,,N,,,lane6", |
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| { | |
| "name": "000000000-AAK03", | |
| "email": "lg1883@nyu.edu", | |
| "flowcell path": "/export/data1/gencore/140911_M02455_0025_000000000-AAK03", | |
| "output path": "/export/data1/demux", | |
| "configure bcl2fastq": "", | |
| "sample sheet": [ | |
| "000000000-AAK03,1,pBOB11_1,,GTTTCG,,N,,,lane1", | |
| "000000000-AAK03,1,pBOB11_3,,CGTACG,,N,,,lane1", | |
| "000000000-AAK03,1,pBOB11_5a,,GAGTGG,,N,,,lane1", |
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| { | |
| "name": "C51F4ACXX", | |
| "email": "lg1883@nyu.edu", | |
| "flowcell path": "/export/data1/gencore/140911_SN911_0231_BC51F4ACXX", | |
| "output path": "/export/data1/demux", | |
| "configure bcl2fastq": "", | |
| "sample sheet": [ | |
| "C51F4ACXX,2,ANUT_12_01,,TGACCA,,N,,,lane2", | |
| "C51F4ACXX,2,ANUT_12_02,,ACAGTG,,N,,,lane2", | |
| "C51F4ACXX,2,ANTT_12_01,,GCCAAT,,N,,,lane2", |
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| { | |
| "name": "HABDFADXX", | |
| "email": "lg1883@nyu.edu", | |
| "flowcell path": "/export/data1/gencore/140918_SN911_0232_BHABDFADXX", | |
| "output path": "/export/data1/demux", | |
| "configure bcl2fastq": "", | |
| "sample sheet": [ | |
| "HABDFADXX,1,SV51,,CGATGT,,N,,,lane1", | |
| "HABDFADXX,1,SV52,,TGACCA,,N,,,lane1", | |
| "HABDFADXX,1,SV53,,ACAGTG,,N,,,lane1", |
moonwatcher
/ edu.nyu.bio.tuboweb.plist
Created
September 24, 2014 02:43
Launchd init script for tuboweb
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd"> | |
| <plist version="1.0"> | |
| <dict> | |
| <key>Label</key> | |
| <string>edu.nyu.bio.tuboweb</string> | |
| <key>WorkingDirectory</key> | |
| <string>/Users/gs/DEV/gencore</string> | |
moonwatcher
/ gist:c07cb06a25fbcd5c0d97
Created
September 25, 2014 03:55
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| { | |
| "_id": "542391398d741f66ce5146b9", | |
| "body": { | |
| "canonical": { | |
| "illumina flowcell id": "H9558ADXX", | |
| "lanes": [ | |
| { | |
| "control lane": false, | |
| "created": "2014-09-20T13:41:40.692503", | |
| "description": "Purugganan : Pool A", |
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| function tar_sequence() { | |
| RUN="$1" | |
| SUBJECT="archive creation for $RUN finished" | |
| ( | |
| cd /export/data1/gencore; | |
| [ -d "$RUN" ] && tar --use-compress-prog=pbzip2 --exclude="Data/Intensities/L00*/C*.1" -cf /export/data1/flowcell/$RUN.tar.bz2 $RUN; | |
| RESULT="result: $?" | |
| echo $RESULT | |
| echo $RESULT | mail -s "$SUBJECT" lg1883@nyu.edu | |
| ) |
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| { | |
| "name": "HABDFADXX", | |
| "email": "lg1883@nyu.edu", | |
| "flowcell path": "/export/data1/gencore/140918_SN911_0232_BHABDFADXX", | |
| "output path": "/export/data1/demux", | |
| "configure bcl2fastq": "--use-bases-mask \"Y*,I6n\"", | |
| "sample sheet": [ | |
| "HABDFADXX,1,SV51,,CGATGT,,N,,,lane1", | |
| "HABDFADXX,1,SV52,,TGACCA,,N,,,lane1", | |
| "HABDFADXX,1,SV53,,ACAGTG,,N,,,lane1", |
moonwatcher
/ HAJW7ADXX.json
Last active
August 29, 2015 14:07
HAJW7ADXX bcl to fastq conversion without failed reads filtering
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| { | |
| "name": "HAJW7ADXX", | |
| "email": "lg1883@nyu.edu", | |
| "flowcell path": "/export/data1/gencore/140924_SN911_0233_AHAJW7ADXX", | |
| "output path": "/export/data1/demux", | |
| "configure bcl2fastq": "--with-failed-reads --use-bases-mask \"Y*,Y*\"", | |
| "sample sheet": [ | |
| "HAJW7ADXX,1,Complete,,Undetermined,,N,,,lane1", | |
| "HAJW7ADXX,2,Complete,,Undetermined,,N,,,lane2" |
moonwatcher
/ com.tuntap.tap.kext.plist
Created
October 17, 2014 06:57
lanuchd plist for loading tap.kext
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd"> | |
| <plist version="1.0"> | |
| <dict> | |
| <key>Label</key> | |
| <string>com.tuntap.tap.kext</string> | |
| <key>ProgramArguments</key> | |
| <array> | |
| <string>kextload</string> | |
| <string>/Library/Extensions/tap.kext</string> |