mossishahi

abyss-pe mpirun='mpirun --mca btl sm' v=-v k=96 np=24 name=DjPG2103 lr='lra' lra=.
./data/barcoded.fastq
mpirun --mca btl sm -np 24 ABYSS-P -k96 -q3 -v   --coverage-hist=coverage.hist -s DjPG2103-bubbles.fa  -o DjPG2103-1.fa ../data/barcoded.fastq
--------------------------------------------------------------------------
At least one pair of MPI processes are unable to reach each other for
MPI communications.  This means that no Open MPI device has indicated
that it can be used to communicate between these processes.  This is
an error; Open MPI requires that all MPI processes be able to reach
each other.  This error can sometimes be the result of forgetting to
specify the "self" BTL.

mossishahi

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by ABySS configure 2.1.4, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ./configure --prefix=/s/chopin/a/grad/asharifi/usr/bin CPPFLAGS=-I/s/chopin/a/grad/asharifi/usr/bin/include --with-mpi=/s/chopin/a/grad/asharifi/usr/lib/openmpi

## --------- ##
## Platform. ##

mossishahi

 ./configure --prefix=/s/chopin/a/grad/asharifi/usr/bin CPPFLAGS=-I/s/chopin/a/grad/asharifi/usr/bin/include -
-with-mpi=/s/chopin/a/grad/asharifi/usr/lib/openmpi
********************************************************
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gawk... (cached) gawk