002032/tasks/falcon_ns.tasks.task_falcon_gen_config-0/fc_run.cfg

fc_run.cfg

[General]
genome_size = 3200000000
pbsmrtpipe.hgap_aggressiveasm_bool = False
falcon_sense_greedy = False
falcon_sense_skip_contained = False
length_cutoff = -1
pbsmrtpipe.hgap_genomelength_str = 3200000000
pa_dbsplit_option = -a -x500 -s400
ovlp_hpcdaligner_option = -v -dal128  -M24 -k24 -h1024 -e.96 -l2500 -s100
seed_coverage = 30.0
falcon_sense_option = --output_multi --min_idt 0.70 --min_cov 4 --max_n_read 400 --n_core 12
pbsmrtpipe.hgap_seedcoverage_str = 30
overlap_filtering_setting = --max_diff 40 --max_cov 80 --min_cov 2 --n_core 12
pbsmrtpipe.hgap_seedlengthcutoff_str = -1
length_cutoff_pr = 15000
ovlp_dbsplit_option = -s400
pa_hpcdaligner_option = -v -dal128 -t16 -e0.75 -M24 -l4800 -k18 -h480 -w8 -s100