mpkocher

mpkocher

mpkocher

mpkocher

mpkocher

mpkocher

mpkocher

"""Filters sequences based on the pls.h5 file, removing apparently
doubly loaded wells and unloaded wells.

Note: The 'chunking' (i.e., chunkFunc) in the task decorator must be
consistent for each instance of SMRTFile. In other words, inputPlsFofn must be
scattered using the same function in *every* P_module. Therefore, the
chunkFunc must be set to context.numMovies.

"""

mpkocher

#!/usr/bin/env python
"""Get a List of Runs from SMRT Link"""
# From:http://bitbucket.nanofluidics.com:7990/projects/SL/repos/pbcommand/browse/pbcommand/cli/examples/template_simple.py

import os
import sys
import logging

from pbcommand.validators import validate_file
from pbcommand.utils import setup_log

mpkocher

import datetime
import json
import copy
import time
import functools
import itertools
import pickle

import requests
import iso8601

mpkocher

// Run with ammonite use amm ExampleCatsMonoid.sc
// import $ivy.`org.typelevel::cats-core:1.0.1`

import cats.implicits._
import cats.instances.all._
import cats.Monoid

// For demonstration purposes, load a file (csv, json) and
// each item can be converted to a record of type R
case class R(name: String, age: Int, favoriteColor: String)