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March 10, 2018 11:39
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Using `fread` as the workhorse for `cSplit`.
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dt1 <- fread("V1 V2 V3 | |
x b;c;d 1 | |
y d;ef 2 | |
z d;ef 3 | |
m tmp 4 | |
n tmp 5 | |
n x;yz 5") | |
dt1[4, V2:=''] # this record will be lost because V2 value is empty string | |
dt1[5, V2:=NA_character_] # NA value is processed correctly | |
# Expect 11 x 3 data.table. Empty values in rows 8 & 9 | |
cSplit_fread(dt1, "V2", ";", "long") | |
# Expect 18 x 3 data.table, 3 rows for each original row | |
cSplit_fread(dt1, "V2", ";", "long", makeEqual = TRUE) | |
dt2 <- fread("V1 V2 V3 | |
x xA;xB;xC x1;x2;x3 | |
y yD y1 | |
z zF;zG z1") | |
# Expect 6 x 3, NA at [6, 3] | |
cSplit_fread(dt2, c("V2", "V3"), ";") | |
DT <- structure(list(Name = structure( | |
c(2L, 1L, 3L), .Label = c("Marcia", "Marcos", "Miguel"), class = "factor"), | |
Likes = structure(1:3, .Label = c("1,2,4,5,6", "1,2,5", "1,2,5,6"), class = "factor"), | |
Siblings = structure(c(3L, 1L, 2L), .Label = c("", "Parks , Ada", "Scott "), class = "factor"), | |
Hates = structure(c(2L, 1L, 3L), .Label = c("1;2;4;", "1;3;4;", "3;"), class = "factor")), | |
.Names = c("Name", "Likes", "Siblings", "Hates"), row.names = c(39L, 44L, 36L), class = "data.frame") | |
setDT(DT) | |
# Expect 1 + 5 + 2 + 4 columns | |
cSplit_fread(DT, c("Likes", "Siblings", "Hates"), c(",", ",", ";")) | |
# Expect 1 + 5 + 2 + 4 columns | |
# Expect "Siblings" to have extra whitespace | |
cSplit_fread(DT, c("Likes", "Siblings", "Hates"), c(",", ",", ";"), stripWhite = FALSE) | |
# Expect 1 + 5 + 5 + 5 columns | |
cSplit_fread(DT, c("Likes", "Siblings", "Hates"), c(",", ",", ";"), makeEqual = TRUE) | |
# Expect 12 x 4 data.table | |
cSplit_fread(DT, c("Likes", "Siblings", "Hates"), c(",", ",", ";"), "long") | |
# Expect 15 x 4 data.table -- like melt(cSplit_fread(...), patterns(splitcols)) | |
cSplit_fread(DT, c("Likes", "Siblings", "Hates"), c(",", ",", ";"), "long") |
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cSplit_fread <- function(indt, splitCols, sep = ",", direction = "wide", | |
fixed = TRUE, drop = TRUE, stripWhite = TRUE, | |
makeEqual = NULL, type.convert = TRUE) { | |
o_names <- names(indt) | |
indt <- setDT(copy(indt)) | |
if (is.numeric(splitCols)) splitCols <- names(indt)[splitCols] | |
if (length(sep) == 1) sep <- rep(sep, length(splitCols)) | |
if (length(sep) != length(splitCols)) stop("Wrong number of sep supplied") | |
for (i in seq_along(splitCols)) { | |
if (isTRUE(fixed)) { | |
temp <- f_split(indt[[splitCols[i]]], sep[i], fixed, stripWhite, type.convert) | |
set(indt, j = sprintf("%s_%d", splitCols[i], seq_along(temp)), value = temp) | |
if (isTRUE(drop)) set(indt, j = splitCols[i], value = NULL) | |
} else { | |
temp <- t_split(indt[[splitCols[i]]], sep[i], fixed, stripWhite, type.convert) | |
set(indt, j = sprintf("%s_%d", splitCols[i], seq_along(temp)), value = temp) | |
if (isTRUE(drop)) set(indt, j = splitCols[i], value = NULL) | |
} | |
} | |
if (direction == "wide") { | |
if (isTRUE(makeEqual)) make_equal(indt, splitCols)[] else indt[] | |
} else if (direction == "long") { | |
indt[, ._ID1 := .I] | |
out <- set(suppressWarnings( | |
melt(make_equal(indt, splitCols), measure = patterns(splitCols), | |
value.name = splitCols)), j = "variable", value = NULL) | |
out[, ._ID2 := sequence(.N), ._ID1] | |
setorderv(out, c("._ID1", "._ID2"), na.last = TRUE) | |
out <- if (isTRUE(makeEqual)) out else out[!(long_fixer(out, splitCols) & ._ID2 != 1)] | |
set(out, j = c("._ID1", "._ID2"), value = NULL) | |
setcolorder(out, o_names)[] | |
} | |
} | |
long_fixer <- function(indt, cols) { | |
temp <- rowSums(is.na(indt[, ..cols])) + rowSums(indt[, ..cols] == "", na.rm = TRUE) | |
temp == length(cols) | |
} | |
make_equal <- function(indt, splitCols) { | |
check <- all_names(names(indt), stubs = splitCols, end_stub = FALSE) | |
if (length(check[["miss"]]) > 0) { | |
nat <- vapply(unname(check[["stubs"]]), function(x) { | |
typeof(indt[[grep(x, names(indt), fixed = TRUE)[[1]]]]) | |
}, character(1L)) | |
for (i in seq_along(nat)) { | |
COLS <- grep(names(nat[i]), check[["miss"]], value = TRUE, fixed = TRUE) | |
if (length(COLS) > 0) indt[, (COLS) := NA_type(nat[i])] | |
} | |
} | |
setcolorder(indt, check[["full_names"]]) | |
} | |
NA_type <- function(string) { | |
switch(string, | |
double = NA_real_, | |
integer = NA_integer_, | |
complex = NA_complex_, | |
character = NA_character_, | |
NA) | |
} | |
all_names <- function(current_names, stubs, end_stub = FALSE) { | |
stub_names <- grep(paste(stubs, collapse = "|"), current_names, value = TRUE) | |
id_names <- grep(paste(stubs, collapse = "|"), current_names, value = TRUE, invert = TRUE) | |
levs <- unique(gsub(paste(stubs, collapse = "|"), "", stub_names)) | |
stub_levs <- gsub("^\\^|\\$$", "", | |
do.call(paste0, expand.grid(stubs, levs)[if (end_stub) 2:1 else 1:2])) | |
full_names <- c(id_names, stub_levs[order(stub_levs)]) | |
levs <- gsub("^[[:punct:]]|[[:punct:]]$", "", levs) | |
levs <- levs[order(levs)] | |
miss <- setdiff(full_names, current_names) | |
list(stubs = stubs, | |
stub_names = stub_names, | |
id_names = id_names, | |
levs = levs, | |
stub_levs = stub_levs, | |
full_names = full_names, | |
miss = miss) | |
} | |
t_split <- function(vec, sep, fixed = TRUE, stripWhite = TRUE, type.convert = TRUE) { | |
temp <- tstrsplit(vec, sep, fixed) | |
if (!isTRUE(stripWhite) & isTRUE(type.convert)) { | |
message("type.convert requires stripWhite = TRUE. Changing setting.") | |
} | |
if (isTRUE(stripWhite)) temp <- trim_list(temp, convert = type.convert) | |
setDT(temp)[] | |
} | |
f_split <- function(vec, sep, fixed = TRUE, stripWhite = TRUE, type.convert = TRUE) { | |
if ((sep == "") | (nchar(sep) > 1L) | (!isTRUE(fixed))) { | |
temp <- t_split(vec, sep, fixed, stripWhite, type.convert) | |
} else { | |
VEC <- as.character(vec) | |
ana <- if (anyNA(VEC)) is.na(VEC) else NULL | |
anb <- !nzchar(VEC) | |
if (is.null(ana) & !any(anb)) { | |
VEC <- stri_flatten(VEC, collapse = "\n") | |
} else { | |
if (!is.null(ana)) VEC[which(ana)] <- sep | |
if (any(anb)) VEC[which(anb)] <- sep | |
VEC <- stri_flatten(VEC, collapse = "\n") | |
} | |
temp <- fread(VEC, sep = sep, fill = TRUE, | |
blank.lines.skip = FALSE, header = FALSE, | |
colClasses = if (!isTRUE(type.convert)) "character" else NULL, | |
strip.white = stripWhite, logical01 = FALSE)[, lapply( | |
.SD, function(x) replace(x, x == "", NA))] | |
if (length(temp) == 1L) { | |
temp <- t_split(vec, sep, fixed, stripWhite, type.convert) | |
} | |
} | |
temp | |
} | |
## TESTS ------------------- | |
cSplit_fread(concat.test, c("Likes", "Hates", "Siblings"), c(",", ";", ",")) | |
cSplit_fread(concat.test, c("Likes", "Hates", "Siblings"), c(",", ";", ",")) | |
cSplit_fread(concat.test, c("Likes", "Hates", "Siblings")) ## misses the ";" separated data | |
cSplit_fread(concat.test, c("Likes", "Hates", "Siblings"), c(",", ";", ","), makeEqual = TRUE) | |
cSplit_fread(concat.test, c("Likes", "Hates", "Siblings"), c(",", ";", ","), direction = "long") | |
cSplit_fread(concat.test, c("Likes", "Hates", "Siblings"), c(",", ";", ","), direction = "long", makeEqual = FALSE) | |
DT <- as.data.table(concat.test) | |
DT_1000 <- rbindlist(replicate(ceiling(1000/nrow(DT)), DT, FALSE)) | |
DT_100K <- rbindlist(replicate(ceiling(100000/nrow(DT_1000)), DT_1000, FALSE)) | |
DT_10M <- rbindlist(replicate(100, DT_100K, FALSE)) |
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https://gist.github.com/mrdwab/2d8305237937cc5de510b3ca4d3d075f