A python script that emulates the LSF "bsub" command so you can test configurations locally before running them on a cluster

bsub

#!/usr/bin/env python
"""
Fake qsub command, for testing qsub jobs in local

original: https://bitbucket.org/dalloliogm/fake-qsub
"""

import argparse
import subprocess
import logging
import os

parser = argparse.ArgumentParser(description = __doc__, 
    epilog='fake-bsub is an environment for testing Grid jobs in local')
#parser.add_argument('commandsfile', metavar='commands', type=str, help='the file containing the commands to be run')
parser.add_argument('--queue', '-q', metavar='queue', type=str, help='queue', default='medium')
parser.add_argument('-J', metavar='jobname', help='set job name')
parser.add_argument('-w', metavar='description', help='Job description - message to be printed when the job is finished?')
parser.add_argument('-o', metavar='stdoutfile', help='STDOUT log file')
parser.add_argument('-e', metavar='stderrfile', help='STDERR log file')
parser.add_argument('-P', metavar='team', help='Team or user name')
parser.add_argument('-M', metavar='memory', help='RAM memory required')
parser.add_argument('-R', metavar='requirements', help='String of resource requirements')
parser.add_argument('-K', help='Wait for job completion', action="store_true")
parser.add_argument('commands', metavar='commands', help='command to be executed', nargs='+')
parser.add_argument('--fakebsub_debug', metavar='fakebsub_debug', help='Fake-bsub debug mode')

# Parse arguments and eventually set debug mode
args = parser.parse_args()
if args.fakebsub_debug is True:
    logging.basicConfig(level=logging.DEBUG)

# Print debugging things
logging.debug(args)
#logging.debug('launching ' + commandsfile)

# Call the bash process
subprocess.call(args.commands, shell=True)