Either add this to your gitconfig:
[merge]
tool = kdiff3
[mergetool "kdiff3"]
cmd = \"C:\\\\Program Files\\\\KDiff3\\\\kdiff3\" $BASE $LOCAL $REMOTE -o $MERGED
Or run These at the command line:
$ git config --global merge.tool kdiff3
$ git config --global mergetool.kdiff3.cmd '"C:\\Program Files\\KDiff3\\kdiff3" $BASE $LOCAL $REMOTE -o $MERGED'
Now you will be able to resolve your conflicts the command line via
$ git mergetool