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mtholder/create_num_tips_for_ott_internals_in_labelled_tree_json.bash

Created December 28, 2019 21:40
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generating a mapping of internal OTT ID that shows up in the synth tree to the number of descendant leaves
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create_num_tips_for_ott_internals_in_labelled_tree_json.bash
#!/bin/bash
otc-tree-tool --indented-table labelled_supertree/labelled_supertree_simplified_ottnames.tre > subproblems/indented-table.txt
cat subproblems/indented-table.txt | sed -E '/ +mrca/d' | sed -E 's/.* ott([0-9]+) : ([0-9]+)/"ott\1": \2,/' > num_tips_for_ott_internals_in_labelled_tree.json
rm subproblems/indented-table.txt
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