check a version of ott for new characters (punctuation and unicode) in labels

check_ott_for_new_char.sh

#!/bin/bash
if ! which ott_names_to_newick.py >/dev/null 2>&1
then 
    echo 'Download ott_names_to_newick.py from https://gist.github.com/mtholder/ac58ab1b3c6a962b9bdc and put it on your PATH'
    exit 1
fi
echo 'grabbing names from taxonomy'
set -x
awk 'BEGIN { FS = "\t\\|\t" } ; {print $3 }' taxonomy.tsv >names.txt
awk 'BEGIN { FS = "\t\\|\t" } ; {print $6 }' taxonomy.tsv >uniqnames.txt
awk 'BEGIN { FS = "\t\\|\t" } ; {print $4 }' synonyms.tsv >syn-uniqnames.txt
echo 'testing names from taxonomy for new characters'
for i in names.txt uniqnames.txt syn-uniqnames.txt
do
    if ! ott_names_to_newick.py -f $i >newick-$i 2>err-$i 
    then 
        cat err-$i
    fi
done