mturch · October 21, 2023 15:56 · Jul 21, 2016
diff --git a/make_conda_env.sh b/make_conda_env.sh
@@ -0,0 +1,47 @@
+%%writefile make_conda_env.sh
+#!/usr/bin/env bash
+# author: github.com/ruxi
+# reproducibly create conda env
+
+read -p "Create new conda env (y/n)?" CONT
+
+if [ "$CONT" == "n" ]; then
+  echo "exit";
+else
+# user chooses to create conda env
+# prompt user for conda env name
+  echo "Creating new conda environment, choose name"
+  read input_variable
+  echo "Name $input_variable was chosen";
+
+  # Create environment.yml or not
+  read -p "Create 'enviroment.yml', will overwrite if exist (y/n)?"
+    if [ "$CONT" == "y" ]; then
+      # yes: create enviroment.yml
+      echo "# BASH: conda env create
+# source activate phd
+name: $input_variable
+dependencies:
+- python=3 
+- jupyter 
+- notebook 
+- numpy 
+- rpy2
+- pandas 
+- scipy 
+- numpy 
+- scikit-learn 
+- seaborn 
+- pip:
+  - plotly">environment.yml    
+
+  #list name of packages
+  conda env create
+    else
+        echo "installing base packages"
+        conda create --name $input_variable\
+        python=3 jupyter notebook numpy rpy2\
+        pandas scipy numpy scikit-learn seaborn 
+    fi
+  echo "to exit: source deactivate"
+fi